myRT

myRT report for GCA_000332335.1_ASM33233v1

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Seq: KB235948.1 Oscillatoria sp. PCC 10802 genomic scaffold Osc10802DRAFT_Contig7.7, whole genome shotgun sequence (6929393 bp)
Overview 1 RT 1: 4666179-4672366 bp 2 RT 2: 6122292-6127340 bp 3 RT 3: 6716421-6721550 bp Neighborhood of RT #1 [4666179, 4672386] STKc_PknB_like YfmG Avd_like RVT-DGRs STKc_PknB_like YfmG Neighborhood of RT #2 [6122292, 6127340] PRK00058 RVT-Retrons Neighborhood of RT #3 [6716421, 6721765] RVT-UG4 Pat17_PNPLA8_PNPLA9_like PYR_PYL_RCAR_like KOG1030 Lipoxygenase Feature: gene Location: 4666179-4668257 bp Feature: domain Description: STKc_PknB_like Location: 4666374-4667157 bp Feature: domain Description: STKc_PknB_like Location: 4666374-46671 57 bp Feature: domain Description: YfmG Location: 4667523-4668243 bp Feature: domain Description: YfmG Location: 4667523-4668243 bp Feature: gene Location: 4668379-4668726 bp Feature: domain Description: Avd_like Location: 4668397-4668703 bp Feature: domain Description: Avd_like Location: 4668397-4668703 bp Feature: gene Location: 4668749-4669897 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4668995-4669640 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4668995-4669640 bp Feature: gene Location: 4670272-4670442 bp Feature: gene Location: 4670587-4672386 bp Feature: domain Description: STKc_PknB_like Location: 4670692-4671481 bp Feature: domain Description: STKc_PknB_like Location: 4670692-4671 481 bp Feature: domain Description: YfmG Location: 4671559-4672366 bp Feature: domain Description: YfmG Location: 4671 559-4672366 bp Feature: gene Location: 6122292-6122957 bp Feature: domain Description: PRK00058 Location: 6122316-6122928 bp Feature: domain Description: PRK00058 Location: 61 2231 6-61 22928 bp Feature: gene Location: 6122967-6123122 bp Feature: gene Location: 6123152-6124702 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6123845-6124463 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 61 23845-61 24463 bp Feature: gene Location: 6124963-6125097 bp Feature: gene Location: 6125697-6127340 bp Feature: gene Location: 6716421-6716573 bp Feature: gene Location: 6716627-6716860 bp Feature: gene Location: 6717222-6717572 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 6717279-6717537 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 671 7279-671 7537 bp Feature: gene Location: 6717960-6719099 bp Feature: domain Description: Pat17_PNPLA8_PNPLA9_like Location: 6717975-6718878 bp Feature: domain Description: Pat1 7_PNPLA8_PNPLA9_like Location: 671 7975-671 8878 bp Feature: gene Location: 6719387-6721765 bp Feature: domain Description: PYR_PYL_RCAR_like Location: 6719393-6719669 bp Feature: domain Description: PYR_PYL_RCAR_like Location: 671 9393-671 9669 bp Feature: domain Description: KOG1030 Location: 6719681-6720065 bp Feature: domain Description: KOG1 030 Location: 671 9681 -6720065 bp Feature: domain Description: Lipoxygenase Location: 6720431-6721550 bp Feature: domain Description: Lipoxygenase Location: 6720431 -6721 550 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT STKc_PknB_like (cd14014), YfmG (COG1262), Avd_like (cd16376), RVT-DGRs, PRK00058 (peptide-methionine (S)-S-oxide reductase MsrA), RVT-Retrons, RVT-UG4, Pat17_PNPLA8_PNPLA9_like (cd07199), PYR_PYL_RCAR_like (cd07821), KOG1030 (KOG1030, Predicted Ca2+-dependent phospholipid-binding protein )
Lipoxygenase (pfam00305)

Seq: KB235950.1 Oscillatoria sp. PCC 10802 genomic scaffold Osc10802DRAFT_Contig5.5, whole genome shotgun sequence (472727 bp)
Overview 1 RT 1: 15413-22189 bp Neighborhood of RT #1 [15413, 22197] RVT_N RVT-GII GIIM HNH OmpR Hpt OmpR OmpR pleD Feature: gene Location: 15413-15658 bp Feature: gene Location: 15914-16168 bp Feature: gene Location: 17071-18891 bp Feature: domain Description: RVT_N Location: 17125-17371 bp Feature: domain Description: RVT_N Location: 1712 5-17371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17413-18091 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17413-18091 bp Feature: domain Description: GIIM Note: maturase Location: 18199-18424 bp Feature: domain Description: GIIM Note: maturase Location: 18199-1842 4 bp Feature: domain Description: HNH Note: nucleases Location: 18646-18778 bp Feature: domain Description: HNH Note: nucleases Location: 18646-18778 bp Feature: gene Location: 19180-19536 bp Feature: gene Location: 19678-22197 bp Feature: domain Description: OmpR Location: 19681-20347 bp Feature: domain Description: OmpR Location: 19681-2 0347 bp Feature: domain Description: Hpt Location: 20587-20848 bp Feature: domain Description: Hpt Location: 2 0587-2 0848 bp Feature: domain Description: OmpR Location: 20959-21313 bp Feature: domain Description: OmpR Location: 2 0959-2 1313 bp Feature: domain Description: OmpR Location: 21328-21694 bp Feature: domain Description: OmpR Location: 2 132 8-2 1694 bp Feature: domain Description: pleD Location: 21700-22189 bp Feature: domain Description: pleD Location: 2 1700-2 2 189 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), OmpR (COG0745), Hpt (pfam01627), pleD (PRK09581)