myRT

myRT report for GCA_000333135.2_gbccbc7v2.0

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Seq: ALIZ02000201.1 Burkholderia cenocepacia BC7 ctg4000011, whole genome shotgun sequence (171305 bp)
Overview 1 RT 1: 87941-91756 bp Neighborhood of RT #1 [87941, 91761] Histone_HNS RVT-Retrons FIN his_ut_repres Feature: gene Location: 87941-88270 bp Feature: domain Description: Histone_HNS Location: 87962-88199 bp Feature: domain Description: Histone_HNS Location: 87962-881 99 bp Feature: gene Location: 88417-88623 bp Feature: gene Location: 88596-89900 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 89016-89652 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8901 6-89652 bp Feature: gene Location: 90199-90771 bp Feature: domain Description: FIN Location: 90385-90736 bp Feature: domain Description: FIN Location: 90385-90736 bp Feature: gene Location: 91006-91761 bp Feature: domain Description: his_ut_repres Location: 91084-91756 bp Feature: domain Description: his_ut_repres Location: 91 084-91 756 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), his_ut_repres (TIGR02018)

Seq: ALIZ02000034.1 Burkholderia cenocepacia BC7 ctg410001A, whole genome shotgun sequence (123020 bp)
Overview 1 RT 1: 11793-19445 bp Neighborhood of RT #1 [11793, 19445] ALDH_F7_AASADH COG3547 RVT-GII GIIM MscK Feature: gene Location: 11793-13424 bp Feature: domain Description: ALDH_F7_AASADH Location: 11967-13383 bp Feature: domain Description: ALDH_F7_AASADH Location: 11967-13383 bp Feature: gene Location: 14114-15148 bp Feature: domain Description: COG3547 Location: 14129-15092 bp Feature: domain Description: COG3547 Location: 1412 9-15092 bp Feature: gene Location: 15319-16686 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15652-16267 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15652 -162 67 bp Feature: domain Description: GIIM Note: maturase Location: 16327-16528 bp Feature: domain Description: GIIM Note: maturase Location: 1632 7-1652 8 bp Feature: gene Location: 16830-19292 bp Feature: domain Description: MscK Location: 16908-19251 bp Feature: domain Description: MscK Location: 16908-192 51 bp Feature: gene Location: 19281-19445 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ALDH_F7_AASADH (cd07130), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), MscK (COG3264)

Seq: ALIZ02000277.1 Burkholderia cenocepacia BC7 ctg400002, whole genome shotgun sequence (95810 bp)
Overview 1 RT 1: 75781-79592 bp Neighborhood of RT #1 [75781, 79600] TnpB_IS66 RVT-GII PRK09409 PRK09183 Feature: gene Location: 75781-76044 bp Feature: gene Location: 76041-76373 bp Feature: domain Description: TnpB_IS66 Location: 76068-76356 bp Feature: domain Description: TnpB_IS66 Location: 76068-763 56 bp Feature: gene Location: 76820-77677 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77114-77633 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77114-7763 3 bp Feature: gene Location: 77669-78517 bp Feature: domain Description: PRK09409 Location: 77672-78500 bp Feature: domain Description: PRK09409 Location: 77672-78500 bp Feature: gene Location: 78827-79600 bp Feature: domain Description: PRK09183 Location: 78830-79592 bp Feature: domain Description: PRK09183 Location: 7883 0-79592 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), RVT-GII, PRK09409 (IS2 transposase TnpB; Reviewed), PRK09183 (transposase/IS protein; Provisional)

Seq: ALIZ02000031.1 Burkholderia cenocepacia BC7 ctg4100032, whole genome shotgun sequence (120479 bp)
Overview 1 RT 1: 102229-108781 bp Neighborhood of RT #1 [102229, 108786] Gmd GDP_MD_SDR_e RVT-GII GIIM COG3547 PRK08133 Feature: gene Location: 102229-103275 bp Feature: domain Description: Gmd Location: 102244-103261 bp Feature: domain Description: Gmd Location: 10224 4 -103261 bp Feature: gene Location: 103262-104227 bp Feature: domain Description: GDP_MD_SDR_e Location: 103298-104195 bp Feature: domain Description: GDP_MD_SDR_e Location: 103298-104 195 bp Feature: gene Location: 104347-105714 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 104680-105295 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 104 680-105295 bp Feature: domain Description: GIIM Note: maturase Location: 105355-105556 bp Feature: domain Description: GIIM Note: maturase Location: 105355-105556 bp Feature: gene Location: 105885-106919 bp Feature: domain Description: COG3547 Location: 105900-106863 bp Feature: domain Description: COG354 7 Location: 105900-106863 bp Feature: gene Location: 107596-108786 bp Feature: domain Description: PRK08133 Location: 107602-108781 bp Feature: domain Description: PRK08133 Location: 107602-108781 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Gmd (COG1089), GDP_MD_SDR_e (cd05260), RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), PRK08133 (O-succinylhomoserine sulfhydrylase; Validated)