myRT

myRT report for GCA_000333155.2_gbcckv2.0

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Seq: ALJA02000008.1 Burkholderia cenocepacia K56-2Valvano ctg7180000002940B, whole genome shotgun sequence (3210615 bp)
Overview 1 RT 1: 529834-536377 bp 2 RT 2: 2200415-2208026 bp Neighborhood of RT #1 [529834, 536391] PRK08133 COG3547 RVT-GII GIIM GDP_MD_SDR_e Gmd Neighborhood of RT #2 [2200415, 2208067] MscK RVT-GII GIIM COG3547 ALDH_F7_AASADH Feature: gene Location: 529834-531024 bp Feature: domain Description: PRK08133 Location: 529840-531019 bp Feature: domain Description: PRK081 33 Location: 529840-531 01 9 bp Feature: gene Location: 531701-532735 bp Feature: domain Description: COG3547 Location: 531716-532679 bp Feature: domain Description: COG3547 Location: 531 71 6-532679 bp Feature: gene Location: 532894-534273 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 533239-533854 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 533239-533854 bp Feature: domain Description: GIIM Note: maturase Location: 533914-534115 bp Feature: domain Description: GIIM Note: maturase Location: 53391 4-5341 1 5 bp Feature: gene Location: 534393-535358 bp Feature: domain Description: GDP_MD_SDR_e Location: 534429-535326 bp Feature: domain Description: GDP_MD_SDR_e Location: 534429-535326 bp Feature: gene Location: 535345-536391 bp Feature: domain Description: Gmd Location: 535360-536377 bp Feature: domain Description: Gmd Location: 535360-536377 bp Feature: gene Location: 2200415-2200564 bp Feature: gene Location: 2200568-2203030 bp Feature: domain Description: MscK Location: 2200646-2202989 bp Feature: domain Description: MscK Location: 2200646-2202989 bp Feature: gene Location: 2203174-2204553 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2203519-2204134 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 220351 9-22041 34 bp Feature: domain Description: GIIM Note: maturase Location: 2204194-2204395 bp Feature: domain Description: GIIM Note: maturase Location: 22041 94-2204395 bp Feature: gene Location: 2204712-2205746 bp Feature: domain Description: COG3547 Location: 2204727-2205690 bp Feature: domain Description: COG3547 Location: 2204727-2205690 bp Feature: gene Location: 2206436-2208067 bp Feature: domain Description: ALDH_F7_AASADH Location: 2206610-2208026 bp Feature: domain Description: ALDH_F7_AASADH Location: 220661 0-2208026 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK08133 (O-succinylhomoserine sulfhydrylase; Validated), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), GDP_MD_SDR_e (cd05260), Gmd (COG1089), MscK (COG3264), ALDH_F7_AASADH (cd07130)

Seq: ALJA02000017.1 Burkholderia cenocepacia K56-2Valvano ctg7180000002943, whole genome shotgun sequence (762671 bp)
Overview 1 RT 1: 103837-107780 bp 2 RT 2: 573947-577762 bp Neighborhood of RT #1 [103837, 107788] InsE TnpB_IS66 RVT-GII PRK09409 PRK09183 Neighborhood of RT #2 [573947, 577767] Histone_HNS RVT-Retrons FIN his_ut_repres Feature: gene Location: 103837-104232 bp Feature: domain Description: InsE Location: 103864-104185 bp Feature: domain Description: InsE Location: 103864-104185 bp Feature: gene Location: 104229-104561 bp Feature: domain Description: TnpB_IS66 Location: 104256-104544 bp Feature: domain Description: TnpB_IS66 Location: 1042 56-104544 bp Feature: gene Location: 105008-105865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 105302-105821 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 105302 -10582 1 bp Feature: gene Location: 105857-106705 bp Feature: domain Description: PRK09409 Location: 105860-106688 bp Feature: domain Description: PRK09409 Location: 105860-106688 bp Feature: gene Location: 107015-107788 bp Feature: domain Description: PRK09183 Location: 107018-107780 bp Feature: domain Description: PRK09183 Location: 107018-107780 bp Feature: gene Location: 573947-574276 bp Feature: domain Description: Histone_HNS Location: 573968-574205 bp Feature: domain Description: Histone_HNS Location: 573968-5742 05 bp Feature: gene Location: 574423-574629 bp Feature: gene Location: 574602-575906 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 575022-575658 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 57502 2 -575658 bp Feature: gene Location: 576205-576693 bp Feature: domain Description: FIN Location: 576307-576658 bp Feature: domain Description: FIN Location: 576307-576658 bp Feature: gene Location: 577012-577767 bp Feature: domain Description: his_ut_repres Location: 577090-577762 bp Feature: domain Description: his_ut_repres Location: 577090-577762 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), TnpB_IS66 (pfam05717), RVT-GII, PRK09409 (IS2 transposase TnpB; Reviewed), PRK09183 (transposase/IS protein; Provisional), Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), his_ut_repres (TIGR02018)