myRT

myRT report for GCA_000335695.1_FWI2.1.0

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Seq: AMZA01000034.1 Beta proteobacterium FWI2 FW12_contig00034, whole genome shotgun sequence (21813 bp)
Overview 1 RT 1: 7368-14960 bp Neighborhood of RT #1 [7368, 15031] MalT RVT_N RVT-GII GIIM HNH DUF3701 Phage_int_SAM_1 Spo0J Feature: gene Location: 7368-8804 bp Feature: domain Description: MalT Location: 7422-8643 bp Feature: domain Description: MalT Location: 7422-8643 bp Feature: gene Location: 9582-9815 bp Feature: gene Location: 9889-11754 bp Feature: domain Description: RVT_N Location: 10108-10348 bp Feature: domain Description: RVT_N Location: 1 01 08-1 0348 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10396-11032 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0396-1 1 032 bp Feature: domain Description: GIIM Note: maturase Location: 11083-11317 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 083-1 1 31 7 bp Feature: domain Description: HNH Note: nucleases Location: 11575-11698 bp Feature: domain Description: HNH Note: nucleases Location: 1 1 575-1 1 698 bp Feature: gene Location: 12367-13947 bp Feature: domain Description: DUF3701 Location: 12670-12919 bp Feature: domain Description: DUF3701 Location: 1 2670-1 291 9 bp Feature: domain Description: Phage_int_SAM_1 Location: 13081-13207 bp Feature: domain Description: Phage_int_SAM_1 Location: 1 3081 -1 3207 bp Feature: gene Location: 14015-15031 bp Feature: domain Description: Spo0J Location: 14225-14960 bp Feature: domain Description: Spo0J Location: 1 4225-1 4960 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MalT (COG2909), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), DUF3701 (pfam12482), Phage_int_SAM_1 (pfam02899), Spo0J (COG1475)

Seq: AMZA01000041.1 Beta proteobacterium FWI2 FW12_contig00041, whole genome shotgun sequence (20188 bp)
Overview 1 RT 1: 9113-15226 bp Neighborhood of RT #1 [9113, 15226] IS5 RVT-GII GIIM RVT-GII Tra5 Feature: gene Location: 9113-9334 bp Feature: gene Location: 9811-10323 bp Feature: domain Description: IS5 Location: 9931-10309 bp Feature: domain Description: IS5 Location: 9931-10309 bp Feature: gene Location: 10345-11589 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10549-11206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10549-112 06 bp Feature: domain Description: GIIM Note: maturase Location: 11284-11506 bp Feature: domain Description: GIIM Note: maturase Location: 112 84-11506 bp Feature: gene Location: 11826-13016 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11970-12657 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11970-12 657 bp Feature: gene Location: 13013-14104 bp Feature: domain Description: Tra5 Location: 13253-13931 bp Feature: domain Description: Tra5 Location: 132 53-13931 bp Feature: gene Location: 13547-15226 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS5 (COG3039), RVT-GII, GIIM (pfam08388), Tra5 (COG2801)

Seq: AMZA01000170.1 Beta proteobacterium FWI2 FW12_contig00170, whole genome shotgun sequence (10335 bp)
Overview 1 RT 1: 7370-10334 bp Neighborhood of RT #1 [7370, 10334] HTH_XRE RVT-Retrons AlpA Feature: gene Location: 7370-7795 bp Feature: gene Location: 8021-8275 bp Feature: domain Description: HTH_XRE Location: 8069-8228 bp Feature: domain Description: HTH_XRE Location: 8069-8228 bp Feature: gene Location: 8337-9716 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8946-9252 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8946-9252 bp Feature: gene Location: 9735-9998 bp Feature: domain Description: AlpA Location: 9759-9915 bp Feature: domain Description: AlpA Location: 9759-9915 bp Feature: gene Location: 10056-10334 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, AlpA (COG3311)

Seq: AMZA01000224.1 Beta proteobacterium FWI2 FW12_contig00224, whole genome shotgun sequence (8990 bp)
Overview 1 RT 1: 335-6008 bp Neighborhood of RT #1 [335, 6016] IS5 RVT_N RVT-GII GIIM RVT-GII GIIM IS5 COG3547 Feature: gene Location: 335-481 bp Feature: gene Location: 628-1050 bp Feature: domain Description: IS5 Location: 634-1024 bp Feature: domain Description: IS5 Location: 634 -1024 bp Feature: gene Location: 1159-2664 bp Feature: domain Description: RVT_N Location: 1237-1471 bp Feature: domain Description: RVT_N Location: 1237-14 71 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1516-2158 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1516-2158 bp Feature: domain Description: GIIM Note: maturase Location: 2209-2443 bp Feature: domain Description: GIIM Note: maturase Location: 2209-24 4 3 bp Feature: gene Location: 2705-3280 bp Feature: gene Location: 3353-4360 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3356-3977 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3356-3977 bp Feature: domain Description: GIIM Note: maturase Location: 4055-4277 bp Feature: domain Description: GIIM Note: maturase Location: 4 055-4 277 bp Feature: gene Location: 5095-5634 bp Feature: domain Description: IS5 Location: 5284-5611 bp Feature: domain Description: IS5 Location: 5284 -5611 bp Feature: gene Location: 5828-6016 bp Feature: domain Description: COG3547 Location: 5843-6008 bp Feature: domain Description: COG354 7 Location: 584 3-6008 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS5 (COG3039), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), COG3547 (Transposase )

Seq: AMZA01000520.1 Beta proteobacterium FWI2 FW12_contig00520, whole genome shotgun sequence (4585 bp)
Overview 1 RT 1: 32-3366 bp Neighborhood of RT #1 [32, 3366] Avd_like RVT-DGRs Feature: gene Location: 32-388 bp Feature: domain Description: Avd_like Location: 59-365 bp Feature: domain Description: Avd_like Location: 5 9-365 bp Feature: gene Location: 481-714 bp Feature: gene Location: 648-1799 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 861-1548 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 861-15 48 bp Feature: gene Location: 1556-2113 bp Feature: gene Location: 2113-3366 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs