myRT

myRT report for GCA_000340515.1_Myxococcus_xanthus_DZF1

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Seq: AOBT01000001.1 Myxococcus xanthus DZF1 contig_000001, whole genome shotgun sequence (747767 bp)
Overview 1 RT 1: 530350-535585 bp Neighborhood of RT #1 [530350, 536013] RNase_HI_like COG4127 RVT-Retrons COG4941 LPAM_1 Feature: gene Location: 530350-530988 bp Feature: domain Description: RNase_HI_like Location: 530599-530977 bp Feature: domain Description: RNase_HI_like Location: 530599-530977 bp Feature: gene Location: 531019-532041 bp Feature: domain Description: COG4127 Location: 531040-532027 bp Feature: domain Description: COG41 27 Location: 531 040-532027 bp Feature: gene Location: 532058-533386 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 532502-533156 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 532502-5331 56 bp Feature: gene Location: 533755-534951 bp Feature: domain Description: COG4941 Location: 533761-534931 bp Feature: domain Description: COG4941 Location: 533761 -534931 bp Feature: gene Location: 535345-536013 bp Feature: domain Description: LPAM_1 Location: 535534-535585 bp Feature: domain Description: LPAM_1 Location: 535534-535585 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RNase_HI_like (cd09279), COG4127 (Predicted restriction endonuclease, Mrr-cat superfamily ), RVT-Retrons, COG4941 (Predicted RNA polymerase sigma factor, contains C-terminal TPR domain ), LPAM_1 (pfam08139)

Seq: AOBT01000006.1 Myxococcus xanthus DZF1 contig_000006, whole genome shotgun sequence (392811 bp)
Overview 1 RT 1: 249772-262514 bp Neighborhood of RT #1 [249772, 262585] BetA BetA BetA DAP2 RVT-Retrons WD40 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 Feature: gene Location: 249772-251172 bp Feature: domain Description: BetA Location: 249880-250171 bp Feature: domain Description: BetA Location: 2 49880-2 50171 bp Feature: domain Description: BetA Location: 250300-250606 bp Feature: domain Description: BetA Location: 2 50300-2 50606 bp Feature: domain Description: BetA Location: 250738-251152 bp Feature: domain Description: BetA Location: 2 50738-2 51152 bp Feature: gene Location: 251447-252337 bp Feature: domain Description: DAP2 Location: 251573-252155 bp Feature: domain Description: DAP2 Location: 2 51573-2 52 155 bp Feature: gene Location: 252341-253798 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 252899-253541 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 52 899-2 53541 bp Feature: gene Location: 254199-256052 bp Feature: gene Location: 256049-262585 bp Feature: domain Description: WD40 Location: 256208-256904 bp Feature: domain Description: WD40 Location: 2 562 08-2 56904 bp Feature: domain Description: HEAT_2 Location: 257126-257309 bp Feature: domain Description: HEAT_2 Location: 2 5712 6-2 57309 bp Feature: domain Description: HEAT_2 Location: 257891-258140 bp Feature: domain Description: HEAT_2 Location: 2 57891-2 58140 bp Feature: domain Description: HEAT_2 Location: 258185-258350 bp Feature: domain Description: HEAT_2 Location: 2 58185-2 58350 bp Feature: domain Description: HEAT_2 Location: 258380-258611 bp Feature: domain Description: HEAT_2 Location: 2 58380-2 58611 bp Feature: domain Description: HEAT_2 Location: 259049-259202 bp Feature: domain Description: HEAT_2 Location: 2 59049-2 592 02 bp Feature: domain Description: HEAT_2 Location: 259313-259472 bp Feature: domain Description: HEAT_2 Location: 2 59313-2 59472 bp Feature: domain Description: HEAT_2 Location: 259832-260021 bp Feature: domain Description: HEAT_2 Location: 2 59832 -2 6002 1 bp Feature: domain Description: HEAT_2 Location: 260066-260273 bp Feature: domain Description: HEAT_2 Location: 2 60066-2 602 73 bp Feature: domain Description: HEAT_2 Location: 260438-260672 bp Feature: domain Description: HEAT_2 Location: 2 60438-2 60672 bp Feature: domain Description: HEAT_2 Location: 261284-261500 bp Feature: domain Description: HEAT_2 Location: 2 612 84-2 61500 bp Feature: domain Description: HEAT_2 Location: 261980-262232 bp Feature: domain Description: HEAT_2 Location: 2 61980-2 62 2 32 bp Feature: domain Description: HEAT_2 Location: 262358-262514 bp Feature: domain Description: HEAT_2 Location: 2 62 358-2 62 514 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BetA (COG2303), DAP2 (COG1506), RVT-Retrons, WD40 (smart00320), HEAT_2 (pfam13646)

Seq: AOBT01000020.1 Myxococcus xanthus DZF1 contig_000020, whole genome shotgun sequence (168046 bp)
Overview 1 RT 1: 156695-163576 bp Neighborhood of RT #1 [156695, 163755] RVT-Retrons COG3791 EpmB EpmB Feature: gene Location: 156695-158560 bp Feature: gene Location: 158557-160155 bp Feature: gene Location: 160334-161617 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 160799-161402 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 160799-161402 bp Feature: gene Location: 161626-162045 bp Feature: domain Description: COG3791 Location: 161653-162007 bp Feature: domain Description: COG3 791 Location: 161653 -162007 bp Feature: gene Location: 162427-163755 bp Feature: domain Description: EpmB Location: 162490-162676 bp Feature: domain Description: EpmB Location: 162490-162676 bp Feature: domain Description: EpmB Location: 162820-163576 bp Feature: domain Description: EpmB Location: 162820-163 576 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, COG3791 (Uncharacterized conserved protein ), EpmB (COG1509)

Seq: AOBT01000065.1 Myxococcus xanthus DZF1 contig_000065, whole genome shotgun sequence (1996 bp)
Overview 1 RT 1: 523-1720 bp Neighborhood of RT #1 [523, 1833] RVT-GII GIIM Feature: gene Location: 523-1833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 808-1426 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 808-14 26 bp Feature: domain Description: GIIM Note: maturase Location: 1498-1720 bp Feature: domain Description: GIIM Note: maturase Location: 14 98-1720 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)