myRT

myRT report for GCA_000341735.1_ASM34173v1

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Seq: KB455575.1 Methylomicrobium buryatense 5G genomic scaffold METBUDRAFT_scaffold1.2, whole genome shotgun sequence (4984547 bp)
Overview 1 RT 1: 721734-728189 bp 2 RT 2: 1338140-1341139 bp 3 RT 3: 1431458-1435074 bp 4 RT 4: 1599003-1603560 bp 5 RT 5: 2258495-2261112 bp 6 RT 6: 2528756-2531095 bp 7 RT 7: 2635046-2639029 bp 8 RT 8: 3118487-3130616 bp 9 RT 9: 3168682-3171786 bp 10 RT 10: 4235636-4240555 bp Neighborhood of RT #1 [721734, 728254] PRK12316 RVT-GII GIIM PRK12467 PRK12467 PRK12467 Thioester-redct Neighborhood of RT #2 [1338140, 1341249] RVT-GII GIIM YflT YflT Neighborhood of RT #3 [1431458, 1435074] RVT-GII GIIM T_den_put_tspse T_den_put_tspse Neighborhood of RT #4 [1599003, 1603565] DDE_Tnp_1 DDE_Tnp_1 RVT-GII RVT-GII GIIM DDE_Tnp_1 PIN_VapC4-5_FitB-like Neighborhood of RT #5 [2258495, 2261120] DUF29 RVT-GII GIIM DUF29 Neighborhood of RT #6 [2528756, 2531095] RVT-GII GIIM Neighborhood of RT #7 [2635046, 2639034] RVT-GII GIIM Methyltransf_23 PTPS Neighborhood of RT #8 [3118487, 3130753] DUF1998 HELICc RVT-UG5 DDE_Tnp_IS66 Neighborhood of RT #9 [3168682, 3171786] RVT-GII GIIM Neighborhood of RT #10 [4235636, 4240555] RVT-GII DDE_Tnp_1 RVT-GII GIIM lipid_A_lpxH Feature: gene Location: 721734-721991 bp Feature: domain Description: PRK12316 Location: 721749-721986 bp Feature: domain Description: PRK1 231 6 Location: 721 749-721 986 bp Feature: gene Location: 722360-722488 bp Feature: gene Location: 722562-723812 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 722766-723423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 722766-723423 bp Feature: domain Description: GIIM Note: maturase Location: 723504-723720 bp Feature: domain Description: GIIM Note: maturase Location: 723504-723720 bp Feature: gene Location: 724066-724458 bp Feature: domain Description: PRK12467 Location: 724183-724432 bp Feature: domain Description: PRK1 2467 Location: 7241 83-724432 bp Feature: gene Location: 724466-728254 bp Feature: domain Description: PRK12467 Location: 724472-725507 bp Feature: domain Description: PRK1 2467 Location: 724472-725507 bp Feature: domain Description: PRK12467 Location: 725609-727004 bp Feature: domain Description: PRK1 2467 Location: 725609-727004 bp Feature: domain Description: Thioester-redct Location: 727115-728189 bp Feature: domain Description: Thioester-redct Location: 7271 1 5-7281 89 bp Feature: gene Location: 1338140-1338280 bp Feature: gene Location: 1339022-1339204 bp Feature: gene Location: 1339376-1340077 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1339607-1340066 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 339607-1 340066 bp Feature: gene Location: 1340249-1340554 bp Feature: domain Description: GIIM Note: maturase Location: 1340270-1340498 bp Feature: domain Description: GIIM Note: maturase Location: 1 340270-1 340498 bp Feature: gene Location: 1340746-1341249 bp Feature: domain Description: YflT Location: 1340779-1340878 bp Feature: domain Description: YflT Location: 1 340779-1 340878 bp Feature: domain Description: YflT Location: 1341067-1341139 bp Feature: domain Description: YflT Location: 1 341 067-1 341 1 39 bp Feature: gene Location: 1431458-1431601 bp Feature: gene Location: 1431621-1431803 bp Feature: gene Location: 1431975-1433153 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1432206-1432827 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 432206-1 432827 bp Feature: domain Description: GIIM Note: maturase Location: 1432869-1433097 bp Feature: domain Description: GIIM Note: maturase Location: 1 432869-1 433097 bp Feature: gene Location: 1433532-1434524 bp Feature: domain Description: T_den_put_tspse Location: 1433712-1433838 bp Feature: domain Description: T_den_put_tspse Location: 1 43371 2-1 433838 bp Feature: domain Description: T_den_put_tspse Location: 1434183-1434381 bp Feature: domain Description: T_den_put_tspse Location: 1 4341 83-1 434381 bp Feature: gene Location: 1434823-1435074 bp Feature: gene Location: 1599003-1599380 bp Feature: domain Description: DDE_Tnp_1 Location: 1599009-1599216 bp Feature: domain Description: DDE_Tnp_1 Location: 1 599009-1 59921 6 bp Feature: domain Description: DDE_Tnp_1 Location: 1599240-1599366 bp Feature: domain Description: DDE_Tnp_1 Location: 1 599240-1 599366 bp Feature: gene Location: 1599975-1600160 bp Feature: gene Location: 1600111-1600653 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1600369-1600597 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 600369-1 600597 bp Feature: gene Location: 1600700-1601386 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1600709-1601039 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 600709-1 601 039 bp Feature: domain Description: GIIM Note: maturase Location: 1601114-1601312 bp Feature: domain Description: GIIM Note: maturase Location: 1 601 1 1 4-1 601 31 2 bp Feature: gene Location: 1601945-1603120 bp Feature: domain Description: DDE_Tnp_1 Location: 1602395-1602842 bp Feature: domain Description: DDE_Tnp_1 Location: 1 602395-1 602842 bp Feature: gene Location: 1603143-1603565 bp Feature: domain Description: PIN_VapC4-5_FitB-like Location: 1603164-1603560 bp Feature: domain Description: PIN_VapC4-5_FitB-like Location: 1 6031 64-1 603560 bp Feature: gene Location: 2258495-2258674 bp Feature: domain Description: DUF29 Location: 2258507-2258624 bp Feature: domain Description: DUF29 Location: 2258507-2258624 bp Feature: gene Location: 2258641-2258874 bp Feature: gene Location: 2258979-2260229 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2259183-2259840 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22591 83-2259840 bp Feature: domain Description: GIIM Note: maturase Location: 2259921-2260137 bp Feature: domain Description: GIIM Note: maturase Location: 2259921 -22601 37 bp Feature: gene Location: 2260303-2260431 bp Feature: gene Location: 2260842-2261120 bp Feature: domain Description: DUF29 Location: 2260845-2261112 bp Feature: domain Description: DUF29 Location: 2260845-2261 1 1 2 bp Feature: gene Location: 2528756-2528947 bp Feature: gene Location: 2528910-2529182 bp Feature: gene Location: 2529287-2530537 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2529491-2530148 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2529491 -25301 48 bp Feature: domain Description: GIIM Note: maturase Location: 2530229-2530445 bp Feature: domain Description: GIIM Note: maturase Location: 2530229-2530445 bp Feature: gene Location: 2530611-2530739 bp Feature: gene Location: 2530916-2531095 bp Feature: gene Location: 2635046-2635384 bp Feature: gene Location: 2635904-2636086 bp Feature: gene Location: 2636258-2637436 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2636489-2637110 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2636489-26371 1 0 bp Feature: domain Description: GIIM Note: maturase Location: 2637152-2637380 bp Feature: domain Description: GIIM Note: maturase Location: 26371 52-2637380 bp Feature: gene Location: 2637763-2638662 bp Feature: domain Description: Methyltransf_23 Location: 2637829-2638249 bp Feature: domain Description: Methyltransf_23 Location: 2637829-2638249 bp Feature: gene Location: 2638666-2639034 bp Feature: domain Description: PTPS Location: 2638690-2639029 bp Feature: domain Description: PTPS Location: 2638690-2639029 bp Feature: gene Location: 3118487-3120337 bp Feature: domain Description: DUF1998 Location: 3119930-3120230 bp Feature: domain Description: DUF1 998 Location: 31 1 9930-31 20230 bp Feature: gene Location: 3120334-3124377 bp Feature: domain Description: HELICc Location: 3123622-3123799 bp Feature: domain Description: HELICc Location: 31 23622-31 23799 bp Feature: gene Location: 3124439-3127621 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3124991-3125495 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 31 24991 -31 25495 bp Feature: gene Location: 3127637-3128947 bp Feature: gene Location: 3129173-3130753 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3129824-3130616 bp Feature: domain Description: DDE_Tnp_IS66 Location: 31 29824-31 3061 6 bp Feature: gene Location: 3168682-3168933 bp Feature: gene Location: 3169199-3169423 bp Feature: gene Location: 3169835-3171085 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3170039-3170696 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 70039-31 70696 bp Feature: domain Description: GIIM Note: maturase Location: 3170777-3170993 bp Feature: domain Description: GIIM Note: maturase Location: 31 70777-31 70993 bp Feature: gene Location: 3171159-3171287 bp Feature: gene Location: 3171583-3171786 bp Feature: gene Location: 4235636-4235821 bp Feature: gene Location: 4235882-4236142 bp Feature: gene Location: 4236210-4236974 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4236582-4236960 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4236582-4236960 bp Feature: gene Location: 4237003-4238019 bp Feature: domain Description: DDE_Tnp_1 Location: 4237048-4237708 bp Feature: domain Description: DDE_Tnp_1 Location: 4237048-4237708 bp Feature: gene Location: 4238037-4238372 bp Feature: gene Location: 4238547-4239074 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4238550-4238718 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4238550-423871 8 bp Feature: domain Description: GIIM Note: maturase Location: 4238763-4238970 bp Feature: domain Description: GIIM Note: maturase Location: 4238763-4238970 bp Feature: gene Location: 4239604-4240329 bp Feature: domain Description: lipid_A_lpxH Location: 4239622-4240309 bp Feature: domain Description: lipid_A_lpxH Location: 4239622-4240309 bp Feature: gene Location: 4240376-4240555 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK12316 (peptide synthase; Provisional), RVT-GII, GIIM (pfam08388), PRK12467 (peptide synthase; Provisional), Thioester-redct (TIGR01746), YflT (pfam11181), T_den_put_tspse (TIGR01784), DDE_Tnp_1 (pfam01609), PIN_VapC4-5_FitB-like (cd18754), DUF29 (pfam01724)
Methyltransf_23 (pfam13489), PTPS (pfam01242), DUF1998 (pfam09369), HELICc (smart00490), RVT-UG5, DDE_Tnp_IS66 (pfam03050), lipid_A_lpxH (TIGR01854)