myRT

myRT report for GCA_000342185.1_ICMP18744PSA1.0

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Seq: ANGD01000016.1 Pseudomonas syringae pv. actinidiae ICMP 18744 Contig016, whole genome shotgun sequence (55774 bp)
Overview 1 RT 1: 88-4972 bp Neighborhood of RT #1 [88, 4992] RVT-GII GIIM PRK00058 GAF PAS PRK10060 Feature: gene Location: 88-1371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 328-943 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 328-943 bp Feature: domain Description: GIIM Note: maturase Location: 988-1198 bp Feature: domain Description: GIIM Note: maturase Location: 988-1 1 98 bp Feature: gene Location: 1505-2152 bp Feature: domain Description: PRK00058 Location: 1526-2147 bp Feature: domain Description: PRK00058 Location: 1 526-21 47 bp Feature: gene Location: 2299-4992 bp Feature: domain Description: GAF Location: 2878-3292 bp Feature: domain Description: GAF Location: 2878-3292 bp Feature: domain Description: PAS Location: 3337-3508 bp Feature: domain Description: PAS Location: 3337-3508 bp Feature: domain Description: PRK10060 Location: 3643-4972 bp Feature: domain Description: PRK1 0060 Location: 3643-4972 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK00058 (peptide-methionine (S)-S-oxide reductase MsrA), GAF (smart00065), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)

Seq: ANGD01000019.1 Pseudomonas syringae pv. actinidiae ICMP 18744 Contig019, whole genome shotgun sequence (47697 bp)
Overview 1 RT 1: 46233-47695 bp Neighborhood of RT #1 [46233, 47694] RVT-GII Feature: gene Location: 46233-46595 bp Feature: gene Location: 46607-46738 bp Feature: gene Location: 47119-47694 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47452-47695 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47452 -47695 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: ANGD01000050.1 Pseudomonas syringae pv. actinidiae ICMP 18744 Contig050, whole genome shotgun sequence (29982 bp)
Overview 1 RT 1: 108-2352 bp Neighborhood of RT #1 [108, 2352] RVT-GII GIIM Feature: gene Location: 108-1376 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 312-969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 12-969 bp Feature: domain Description: GIIM Note: maturase Location: 1047-1269 bp Feature: domain Description: GIIM Note: maturase Location: 1047-1269 bp Feature: gene Location: 1410-1577 bp Feature: gene Location: 1636-2352 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: ANGD01000062.1 Pseudomonas syringae pv. actinidiae ICMP 18744 Contig062, whole genome shotgun sequence (47039 bp)
Overview 1 RT 1: 42446-45675 bp Neighborhood of RT #1 [42446, 46634] ComA-like_MBL-fold RVT-Retrons Feature: gene Location: 42446-42709 bp Feature: gene Location: 43063-44481 bp Feature: domain Description: ComA-like_MBL-fold Location: 43612-44098 bp Feature: domain Description: ComA-like_MBL-fold Location: 4 3612-4 4 098 bp Feature: gene Location: 44925-46634 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 45078-45675 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4 5078-4 5675 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ComA-like_MBL-fold (cd07731), RVT-Retrons

Seq: ANGD01000086.1 Pseudomonas syringae pv. actinidiae ICMP 18744 Contig086, whole genome shotgun sequence (20231 bp)
Overview 1 RT 1: 13058-18994 bp Neighborhood of RT #1 [13058, 19029] modC_ABC Top1 RVT-GII Intron_maturas2 HNHc DUF2625 Feature: gene Location: 13058-14146 bp Feature: domain Description: modC_ABC Location: 13073-14138 bp Feature: domain Description: modC_ABC Location: 13073-14138 bp Feature: gene Location: 14235-15290 bp Feature: domain Description: Top1 Location: 14268-15282 bp Feature: domain Description: Top1 Location: 14268-15 282 bp Feature: gene Location: 16121-17956 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16382-17195 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16382-17195 bp Feature: domain Description: Intron_maturas2 Location: 17291-17606 bp Feature: domain Description: Intron_maturas2 Location: 17291-17606 bp Feature: domain Description: HNHc Note: nucleases Location: 17729-17894 bp Feature: domain Description: HNHc Note: nucleases Location: 17729-17894 bp Feature: gene Location: 18196-18387 bp Feature: gene Location: 18394-19029 bp Feature: domain Description: DUF2625 Location: 18406-18994 bp Feature: domain Description: DUF2625 Location: 18406-18994 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT modC_ABC (TIGR02142), Top1 (COG3569), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF2625 (pfam10946)

Seq: ANGD01000220.1 Pseudomonas syringae pv. actinidiae ICMP 18744 Contig220, whole genome shotgun sequence (4868 bp)
Overview 1 RT 1: 1628-3900 bp Neighborhood of RT #1 [1628, 4652] UvrD_C RVT-UG9 Feature: gene Location: 1628-2572 bp Feature: gene Location: 2933-3523 bp Feature: domain Description: UvrD_C Location: 3257-3452 bp Feature: domain Description: UvrD_C Location: 3257-3452 bp Feature: gene Location: 3621-4652 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3627-3900 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 36 27-3900 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UvrD_C (pfam13361), RVT-UG9

Seq: ANGD01000419.1 Pseudomonas syringae pv. actinidiae ICMP 18744 Contig419, whole genome shotgun sequence (364 bp)
Overview 1 RT 1: 2-359 bp Neighborhood of RT #1 [2, 361] RVT-GII Feature: gene Location: 2-361 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-359 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-359 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: ANGD01000420.1 Pseudomonas syringae pv. actinidiae ICMP 18744 Contig420, whole genome shotgun sequence (602 bp)
Overview 1 RT 1: 2-470 bp Neighborhood of RT #1 [2, 601] RVT-GII Feature: gene Location: 2-601 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-470 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-470 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: ANGD01000435.1 Pseudomonas syringae pv. actinidiae ICMP 18744 Contig442, whole genome shotgun sequence (201 bp)
Overview 1 RT 1: 1-199 bp Neighborhood of RT #1 [1, 198] RVT-GII Feature: gene Location: 1-198 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-199 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-19 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII