myRT

myRT report for GCA_000344375.1_ICMP18800PSA1.0

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Seq: ANJD01000005.1 Pseudomonas syringae pv. actinidiae ICMP 18800 Contig005, whole genome shotgun sequence (62029 bp)
Overview 1 RT 1: 88-2044 bp Neighborhood of RT #1 [88, 2121] RVT-GII GIIM YhhQ Feature: gene Location: 88-1371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 328-943 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 328-943 bp Feature: domain Description: GIIM Note: maturase Location: 988-1198 bp Feature: domain Description: GIIM Note: maturase Location: 988-1 1 98 bp Feature: gene Location: 1440-1655 bp Feature: gene Location: 1654-2121 bp Feature: domain Description: YhhQ Location: 1729-2044 bp Feature: domain Description: YhhQ Location: 1 729-2044 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YhhQ (COG1738)

Seq: ANJD01000020.1 Pseudomonas syringae pv. actinidiae ICMP 18800 Contig020, whole genome shotgun sequence (48697 bp)
Overview 1 RT 1: 78-5987 bp Neighborhood of RT #1 [78, 5987] COG3666 DDE_Tnp_1_6 RVT-Retrons ComA-like_MBL-fold Feature: gene Location: 78-1301 bp Feature: domain Description: COG3666 Location: 120-561 bp Feature: domain Description: COG3666 Location: 12 0-561 bp Feature: domain Description: DDE_Tnp_1_6 Location: 1038-1260 bp Feature: domain Description: DDE_Tnp_1_6 Location: 1038-12 60 bp Feature: gene Location: 1552-1713 bp Feature: gene Location: 1799-3508 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1952-2549 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1952 -2 549 bp Feature: gene Location: 3952-5370 bp Feature: domain Description: ComA-like_MBL-fold Location: 4501-4987 bp Feature: domain Description: ComA-like_MBL-fold Location: 4501-4987 bp Feature: gene Location: 5724-5987 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751), RVT-Retrons, ComA-like_MBL-fold (cd07731)

Seq: ANJD01000036.1 Pseudomonas syringae pv. actinidiae ICMP 18800 Contig036, whole genome shotgun sequence (40185 bp)
Overview 1 RT 1: 108-2137 bp Neighborhood of RT #1 [108, 2166] RVT-GII GIIM PAAR_motif Feature: gene Location: 108-1376 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 312-969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 12-969 bp Feature: domain Description: GIIM Note: maturase Location: 1047-1269 bp Feature: domain Description: GIIM Note: maturase Location: 1047-1269 bp Feature: gene Location: 1419-1901 bp Feature: gene Location: 1912-2166 bp Feature: domain Description: PAAR_motif Location: 1936-2137 bp Feature: domain Description: PAAR_motif Location: 193 6-213 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PAAR_motif (pfam05488)

Seq: ANJD01000091.1 Pseudomonas syringae pv. actinidiae ICMP 18800 Contig091, whole genome shotgun sequence (20231 bp)
Overview 1 RT 1: 1203-7166 bp Neighborhood of RT #1 [1203, 7174] DUF2625 RVT-GII Intron_maturas2 HNHc Top1 modC_ABC Feature: gene Location: 1203-1838 bp Feature: domain Description: DUF2625 Location: 1215-1803 bp Feature: domain Description: DUF2625 Location: 1215-1803 bp Feature: gene Location: 1845-2036 bp Feature: gene Location: 2276-4111 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2537-3350 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2537-3350 bp Feature: domain Description: Intron_maturas2 Location: 3446-3761 bp Feature: domain Description: Intron_maturas2 Location: 34 4 6-3761 bp Feature: domain Description: HNHc Note: nucleases Location: 3884-4049 bp Feature: domain Description: HNHc Note: nucleases Location: 3884 -4 04 9 bp Feature: gene Location: 4942-5997 bp Feature: domain Description: Top1 Location: 4975-5989 bp Feature: domain Description: Top1 Location: 4 975-5989 bp Feature: gene Location: 6086-7174 bp Feature: domain Description: modC_ABC Location: 6101-7166 bp Feature: domain Description: modC_ABC Location: 6101-7166 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2625 (pfam10946), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Top1 (COG3569), modC_ABC (TIGR02142)

Seq: ANJD01000234.1 Pseudomonas syringae pv. actinidiae ICMP 18800 Contig234, whole genome shotgun sequence (4869 bp)
Overview 1 RT 1: 1629-3901 bp Neighborhood of RT #1 [1629, 4653] UvrD_C RVT-UG9 Feature: gene Location: 1629-2573 bp Feature: gene Location: 2934-3524 bp Feature: domain Description: UvrD_C Location: 3258-3453 bp Feature: domain Description: UvrD_C Location: 325 8-345 3 bp Feature: gene Location: 3622-4653 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3628-3901 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3628-3901 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UvrD_C (pfam13361), RVT-UG9

Seq: ANJD01000407.1 Pseudomonas syringae pv. actinidiae ICMP 18800 Contig407, whole genome shotgun sequence (261 bp)
Overview 1 RT 1: 2-257 bp Neighborhood of RT #1 [2, 259] RVT-GII Feature: gene Location: 2-259 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-257 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-257 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: ANJD01000429.1 Pseudomonas syringae pv. actinidiae ICMP 18800 Contig430, whole genome shotgun sequence (416 bp)
Overview 1 RT 1: 1-415 bp Neighborhood of RT #1 [1, 414] RVT-GII Feature: gene Location: 1-414 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 169-415 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 169-415 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: ANJD01000438.1 Pseudomonas syringae pv. actinidiae ICMP 18800 Contig441, whole genome shotgun sequence (204 bp)
Overview 1 RT 1: 2-197 bp Neighborhood of RT #1 [2, 202] RVT-GII Feature: gene Location: 2-202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-197 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-197 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: ANJD01000439.1 Pseudomonas syringae pv. actinidiae ICMP 18800 Contig442, whole genome shotgun sequence (204 bp)
Overview 1 RT 1: 2-197 bp Neighborhood of RT #1 [2, 202] RVT-GII Feature: gene Location: 2-202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-197 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-19 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: ANJD01000446.1 Pseudomonas syringae pv. actinidiae ICMP 18800 Contig450, whole genome shotgun sequence (201 bp)
Overview 1 RT 1: 1-199 bp Neighborhood of RT #1 [1, 198] RVT-GII Feature: gene Location: 1-198 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-199 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-199 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: ANJD01000449.1 Pseudomonas syringae pv. actinidiae ICMP 18800 Contig453, whole genome shotgun sequence (265 bp)
Overview 1 RT 1: 2-203 bp Neighborhood of RT #1 [2, 262] RVT-GII Feature: gene Location: 2-262 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-203 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-203 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII