myRT

myRT report for GCA_000344395.1_ICMP18804v1.0

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Seq: ANJE01000001.1 Pseudomonas syringae pv. actinidiae ICMP 18804 Contig001, whole genome shotgun sequence (224101 bp)
Overview 1 RT 1: 3-2782 bp Neighborhood of RT #1 [3, 2784] RVT-GII SphA PRK12428 Feature: gene Location: 3-401 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 336-402 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 336-402 bp Feature: gene Location: 983-1930 bp Feature: domain Description: SphA Location: 1007-1922 bp Feature: domain Description: SphA Location: 1 007-1 922 bp Feature: gene Location: 2017-2784 bp Feature: domain Description: PRK12428 Location: 2083-2782 bp Feature: domain Description: PRK1 2428 Location: 2083-2782 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, SphA (COG4313), PRK12428 (coniferyl-alcohol dehydrogenase)

Seq: ANJE01000008.1 Pseudomonas syringae pv. actinidiae ICMP 18804 Contig008, whole genome shotgun sequence (84181 bp)
Overview 1 RT 1: 61632-66329 bp Neighborhood of RT #1 [61632, 66329] Zn_Tnp_IS91 RVT-GII HopW1-1 Feature: gene Location: 61632-61763 bp Feature: gene Location: 61882-62412 bp Feature: domain Description: Zn_Tnp_IS91 Location: 61990-62254 bp Feature: domain Description: Zn_Tnp_IS91 Location: 61990-62 2 54 bp Feature: gene Location: 63309-63488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63312-63477 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63312 -63477 bp Feature: gene Location: 63702-66008 bp Feature: domain Description: HopW1-1 Location: 63705-64647 bp Feature: domain Description: HopW1-1 Location: 63705-64647 bp Feature: gene Location: 66144-66329 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Zn_Tnp_IS91 (pfam14319), RVT-GII, HopW1-1 (pfam15457)

Seq: ANJE01000026.1 Pseudomonas syringae pv. actinidiae ICMP 18804 Contig026, whole genome shotgun sequence (93054 bp)
Overview 1 RT 1: 91805-92917 bp Neighborhood of RT #1 [91805, 93051] RVT-GII GIIM Feature: gene Location: 91805-92029 bp Feature: gene Location: 92077-92406 bp Feature: gene Location: 92485-93051 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92488-92632 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92488-9263 2 bp Feature: domain Description: GIIM Note: maturase Location: 92689-92917 bp Feature: domain Description: GIIM Note: maturase Location: 92689-92917 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: ANJE01000088.1 Pseudomonas syringae pv. actinidiae ICMP 18804 Contig088, whole genome shotgun sequence (52418 bp)
Overview 1 RT 1: 39692-45983 bp Neighborhood of RT #1 [39692, 46063] MscS RVT-Retrons DUF4427 Pentapeptide Pentapeptide Pentapeptide Feature: gene Location: 39692-40492 bp Feature: domain Description: MscS Location: 39797-40460 bp Feature: domain Description: MscS Location: 39797-4 04 60 bp Feature: gene Location: 41015-42271 bp Feature: gene Location: 42433-43599 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 42688-43309 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4 2688-4 3309 bp Feature: gene Location: 43761-45026 bp Feature: domain Description: DUF4427 Location: 44721-45006 bp Feature: domain Description: DUF4 4 27 Location: 4 4 721-4 5006 bp Feature: gene Location: 45431-46063 bp Feature: domain Description: Pentapeptide Location: 45650-45761 bp Feature: domain Description: Pentapeptide Location: 4 5650-4 5761 bp Feature: domain Description: Pentapeptide Location: 45767-45872 bp Feature: domain Description: Pentapeptide Location: 4 5767-4 5872 bp Feature: domain Description: Pentapeptide Location: 45887-45983 bp Feature: domain Description: Pentapeptide Location: 4 5887-4 5983 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MscS (COG0668), RVT-Retrons, DUF4427 (pfam14468), Pentapeptide (pfam00805)

Seq: ANJE01000167.1 Pseudomonas syringae pv. actinidiae ICMP 18804 Contig167, whole genome shotgun sequence (5543 bp)
Overview 1 RT 1: 235-4823 bp Neighborhood of RT #1 [235, 4823] RVT-UG15 SIRT5_Af1_CobB Feature: gene Location: 235-411 bp Feature: gene Location: 901-1203 bp Feature: gene Location: 1527-3173 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 1974-2385 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 1974-2385 bp Feature: gene Location: 3454-4233 bp Feature: domain Description: SIRT5_Af1_CobB Location: 3508-4195 bp Feature: domain Description: SIRT5 _Af1_CobB Location: 35 08-4195 bp Feature: gene Location: 4488-4823 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG15, SIRT5_Af1_CobB (cd01412)

Seq: ANJE01000233.1 Pseudomonas syringae pv. actinidiae ICMP 18804 Contig233, whole genome shotgun sequence (597 bp)
Overview 1 RT 1: 2-596 bp Neighborhood of RT #1 [2, 595] RVT-GII Feature: gene Location: 2-595 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32-596 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32-596 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: ANJE01000252.1 Pseudomonas syringae pv. actinidiae ICMP 18804 Contig255, whole genome shotgun sequence (597 bp)
Overview 1 RT 1: 3-597 bp Neighborhood of RT #1 [3, 596] RVT-GII Feature: gene Location: 3-596 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33-597 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33-597 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII