myRT

myRT report for GCA_000344415.1_ICMP18806v1.0

Download annotations/find similar RTs

Seq: ANJF01000003.1 Pseudomonas syringae pv. actinidifoliorum strain ICMP 18806 Contig003, whole genome shotgun sequence (75092 bp)
Overview 1 RT 1: 3-2253 bp Neighborhood of RT #1 [3, 2258] RVT-GII lipid_A_lpxH PRK10791 Feature: gene Location: 3-482 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 417-483 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 7-483 bp Feature: gene Location: 1012-1758 bp Feature: domain Description: lipid_A_lpxH Location: 1021-1705 bp Feature: domain Description: lipid_A_lpxH Location: 1 021 -1 705 bp Feature: gene Location: 1755-2258 bp Feature: domain Description: PRK10791 Location: 1767-2253 bp Feature: domain Description: PRK1 0791 Location: 1 767-2253 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, lipid_A_lpxH (TIGR01854), PRK10791 (peptidylprolyl isomerase B)

Seq: ANJF01000021.1 Pseudomonas syringae pv. actinidifoliorum strain ICMP 18806 Contig021, whole genome shotgun sequence (44216 bp)
Overview 1 RT 1: 40285-44079 bp Neighborhood of RT #1 [40285, 44213] STN FecA RVT-GII GIIM Feature: gene Location: 40285-42630 bp Feature: domain Description: STN Location: 40471-40618 bp Feature: domain Description: STN Location: 40471-40618 bp Feature: domain Description: FecA Location: 40621-42628 bp Feature: domain Description: FecA Location: 4062 1-42 62 8 bp Feature: gene Location: 42806-43306 bp Feature: gene Location: 43647-44213 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43650-43794 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43650-43794 bp Feature: domain Description: GIIM Note: maturase Location: 43851-44079 bp Feature: domain Description: GIIM Note: maturase Location: 43851-44079 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT STN (smart00965), FecA (COG4772), RVT-GII, GIIM (pfam08388)

Seq: ANJF01000052.1 Pseudomonas syringae pv. actinidifoliorum strain ICMP 18806 Contig052, whole genome shotgun sequence (47831 bp)
Overview 1 RT 1: 35105-41396 bp Neighborhood of RT #1 [35105, 41476] MscS RVT-Retrons DUF4427 Pentapeptide Pentapeptide Pentapeptide Feature: gene Location: 35105-35905 bp Feature: domain Description: MscS Location: 35210-35873 bp Feature: domain Description: MscS Location: 3 5210-3 5873 bp Feature: gene Location: 36428-37684 bp Feature: gene Location: 37846-39012 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 38101-38722 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 8101-3 8722 bp Feature: gene Location: 39174-40439 bp Feature: domain Description: DUF4427 Location: 40134-40419 bp Feature: domain Description: DUF4427 Location: 4013 4-40419 bp Feature: gene Location: 40844-41476 bp Feature: domain Description: Pentapeptide Location: 41063-41174 bp Feature: domain Description: Pentapeptide Location: 41063 -41174 bp Feature: domain Description: Pentapeptide Location: 41180-41285 bp Feature: domain Description: Pentapeptide Location: 41180-41285 bp Feature: domain Description: Pentapeptide Location: 41300-41396 bp Feature: domain Description: Pentapeptide Location: 413 00-413 96 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MscS (COG0668), RVT-Retrons, DUF4427 (pfam14468), Pentapeptide (pfam00805)

Seq: ANJF01000089.1 Pseudomonas syringae pv. actinidifoliorum strain ICMP 18806 Contig089, whole genome shotgun sequence (36300 bp)
Overview 1 RT 1: 13612-18310 bp Neighborhood of RT #1 [13612, 18310] Zn_Tnp_IS91 RVT-GII HopW1-1 Feature: gene Location: 13612-13743 bp Feature: gene Location: 13863-14393 bp Feature: domain Description: Zn_Tnp_IS91 Location: 13971-14235 bp Feature: domain Description: Zn_Tnp_IS91 Location: 13971-14 235 bp Feature: gene Location: 15290-15469 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15293-15458 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15293-154 58 bp Feature: gene Location: 15683-17989 bp Feature: domain Description: HopW1-1 Location: 15686-16628 bp Feature: domain Description: HopW1-1 Location: 15686-16628 bp Feature: gene Location: 18125-18310 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Zn_Tnp_IS91 (pfam14319), RVT-GII, HopW1-1 (pfam15457)

Seq: ANJF01000186.1 Pseudomonas syringae pv. actinidifoliorum strain ICMP 18806 Contig186, whole genome shotgun sequence (5556 bp)
Overview 1 RT 1: 235-4823 bp Neighborhood of RT #1 [235, 4823] RVT-UG15 SIRT5_Af1_CobB Feature: gene Location: 235-411 bp Feature: gene Location: 901-1203 bp Feature: gene Location: 1527-3173 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 1974-2385 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 1974-2385 bp Feature: gene Location: 3454-4233 bp Feature: domain Description: SIRT5_Af1_CobB Location: 3508-4195 bp Feature: domain Description: SIRT5 _Af1_CobB Location: 35 08-4195 bp Feature: gene Location: 4488-4823 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG15, SIRT5_Af1_CobB (cd01412)

Seq: ANJF01000246.1 Pseudomonas syringae pv. actinidifoliorum strain ICMP 18806 Contig246, whole genome shotgun sequence (595 bp)
Overview 1 RT 1: 1-595 bp Neighborhood of RT #1 [1, 594] RVT-GII Feature: gene Location: 1-594 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31-595 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31-595 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: ANJF01000266.1 Pseudomonas syringae pv. actinidifoliorum strain ICMP 18806 Contig268, whole genome shotgun sequence (597 bp)
Overview 1 RT 1: 2-596 bp Neighborhood of RT #1 [2, 595] RVT-GII Feature: gene Location: 2-595 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32-596 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32-596 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII