myRT

myRT report for GCA_000344435.1_TP1_PSA1.0

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Seq: ANJG01000007.1 Pseudomonas syringae pv. actinidiae TP1 Contig007, whole genome shotgun sequence (138717 bp)
Overview 1 RT 1: 136597-138460 bp Neighborhood of RT #1 [136597, 138633] YhhQ RVT-GII GIIM Feature: gene Location: 136597-137064 bp Feature: domain Description: YhhQ Location: 136672-136987 bp Feature: domain Description: YhhQ Location: 1 36672-1 36987 bp Feature: gene Location: 137063-137278 bp Feature: gene Location: 137347-138633 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 137590-138205 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 37590-1 38205 bp Feature: domain Description: GIIM Note: maturase Location: 138250-138460 bp Feature: domain Description: GIIM Note: maturase Location: 1 38250-1 38460 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhhQ (COG1738), RVT-GII, GIIM (pfam08388)

Seq: ANJG01000008.1 Pseudomonas syringae pv. actinidiae TP1 Contig008, whole genome shotgun sequence (49160 bp)
Overview 1 RT 1: 43791-49042 bp Neighborhood of RT #1 [43791, 49083] ComA-like_MBL-fold RVT-Retrons COG3666 DDE_Tnp_1_6 Feature: gene Location: 43791-45209 bp Feature: domain Description: ComA-like_MBL-fold Location: 44340-44826 bp Feature: domain Description: ComA-like_MBL-fold Location: 44340-4482 6 bp Feature: gene Location: 45394-45528 bp Feature: gene Location: 45653-47362 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 45806-46403 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 45806-46403 bp Feature: gene Location: 47448-47609 bp Feature: gene Location: 47860-49083 bp Feature: domain Description: COG3666 Location: 47902-48343 bp Feature: domain Description: COG3666 Location: 47902 -48343 bp Feature: domain Description: DDE_Tnp_1_6 Location: 48820-49042 bp Feature: domain Description: DDE_Tnp_1_6 Location: 4882 0-49042 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ComA-like_MBL-fold (cd07731), RVT-Retrons, COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751)

Seq: ANJG01000018.1 Pseudomonas syringae pv. actinidiae TP1 Contig018, whole genome shotgun sequence (37053 bp)
Overview 1 RT 1: 1203-7166 bp Neighborhood of RT #1 [1203, 7174] DUF2625 RVT-GII Intron_maturas2 HNHc Top1 modC_ABC Feature: gene Location: 1203-1838 bp Feature: domain Description: DUF2625 Location: 1215-1803 bp Feature: domain Description: DUF2625 Location: 1215-1803 bp Feature: gene Location: 1845-2036 bp Feature: gene Location: 2276-4111 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2537-3350 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 253 7-3 3 50 bp Feature: domain Description: Intron_maturas2 Location: 3446-3761 bp Feature: domain Description: Intron_maturas2 Location: 3 446-3 761 bp Feature: domain Description: HNHc Note: nucleases Location: 3884-4049 bp Feature: domain Description: HNHc Note: nucleases Location: 3 884-4049 bp Feature: gene Location: 4942-5997 bp Feature: domain Description: Top1 Location: 4975-5989 bp Feature: domain Description: Top1 Location: 4975-5989 bp Feature: gene Location: 6086-7174 bp Feature: domain Description: modC_ABC Location: 6101-7166 bp Feature: domain Description: modC_ABC Location: 6101-7166 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2625 (pfam10946), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Top1 (COG3569), modC_ABC (TIGR02142)

Seq: ANJG01000069.1 Pseudomonas syringae pv. actinidiae TP1 Contig069, whole genome shotgun sequence (24084 bp)
Overview 1 RT 1: 21495-23974 bp Neighborhood of RT #1 [21495, 24081] PRK10756 TnpB_IS66 RVT-GII GIIM Feature: gene Location: 21495-21965 bp Feature: domain Description: PRK10756 Location: 21525-21948 bp Feature: domain Description: PRK10756 Location: 21525-2194 8 bp Feature: gene Location: 22098-22406 bp Feature: domain Description: TnpB_IS66 Location: 22128-22281 bp Feature: domain Description: TnpB_IS66 Location: 22128-22281 bp Feature: gene Location: 22813-24081 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23017-23674 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23017-23674 bp Feature: domain Description: GIIM Note: maturase Location: 23752-23974 bp Feature: domain Description: GIIM Note: maturase Location: 23752-23974 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10756 (protein CreA), TnpB_IS66 (pfam05717), RVT-GII, GIIM (pfam08388)

Seq: ANJG01000240.1 Pseudomonas syringae pv. actinidiae TP1 Contig240, whole genome shotgun sequence (4870 bp)
Overview 1 RT 1: 217-3241 bp Neighborhood of RT #1 [217, 3241] RVT-UG9 UvrD_C Feature: gene Location: 217-1248 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 223-496 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 223-496 bp Feature: gene Location: 1346-1936 bp Feature: domain Description: UvrD_C Location: 1670-1865 bp Feature: domain Description: UvrD_C Location: 1670-1865 bp Feature: gene Location: 2297-3241 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG9, UvrD_C (pfam13361)

Seq: ANJG01000444.1 Pseudomonas syringae pv. actinidiae TP1 Contig445, whole genome shotgun sequence (416 bp)
Overview 1 RT 1: 1-415 bp Neighborhood of RT #1 [1, 414] RVT-GII Feature: gene Location: 1-414 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 169-415 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16 9-415 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: ANJG01000452.1 Pseudomonas syringae pv. actinidiae TP1 Contig456, whole genome shotgun sequence (365 bp)
Overview 1 RT 1: 2-362 bp Neighborhood of RT #1 [2, 364] RVT-GII Feature: gene Location: 2-364 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-362 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-362 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: ANJG01000453.1 Pseudomonas syringae pv. actinidiae TP1 Contig457, whole genome shotgun sequence (204 bp)
Overview 1 RT 1: 2-197 bp Neighborhood of RT #1 [2, 202] RVT-GII Feature: gene Location: 2-202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-197 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-197 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: ANJG01000457.1 Pseudomonas syringae pv. actinidiae TP1 Contig464, whole genome shotgun sequence (201 bp)
Overview 1 RT 1: 1-199 bp Neighborhood of RT #1 [1, 198] RVT-GII Feature: gene Location: 1-198 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-199 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-19 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: ANJG01000467.1 Pseudomonas syringae pv. actinidiae TP1 Contig479, whole genome shotgun sequence (265 bp)
Overview 1 RT 1: 1-205 bp Neighborhood of RT #1 [1, 264] RVT-GII Feature: gene Location: 1-264 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-205 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-205 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII