myRT

myRT report for GCA_000344455.1_TP6-1_PSA1.0

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Seq: ANJH01000005.1 Pseudomonas syringae pv. actinidiae TP6-1 Contig005, whole genome shotgun sequence (62308 bp)
Overview 1 RT 1: 60188-62051 bp Neighborhood of RT #1 [60188, 62224] YhhQ RVT-GII GIIM Feature: gene Location: 60188-60655 bp Feature: domain Description: YhhQ Location: 60263-60578 bp Feature: domain Description: YhhQ Location: 60263-60578 bp Feature: gene Location: 60654-60869 bp Feature: gene Location: 60938-62224 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61181-61796 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 1 81 -61 796 bp Feature: domain Description: GIIM Note: maturase Location: 61841-62051 bp Feature: domain Description: GIIM Note: maturase Location: 61 841 -62051 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhhQ (COG1738), RVT-GII, GIIM (pfam08388)

Seq: ANJH01000038.1 Pseudomonas syringae pv. actinidiae TP6-1 Contig038, whole genome shotgun sequence (32997 bp)
Overview 1 RT 1: 3-2783 bp Neighborhood of RT #1 [3, 2783] RVT-GII GIIM Feature: gene Location: 3-158 bp Feature: gene Location: 539-1807 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 743-1400 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 743-1400 bp Feature: domain Description: GIIM Note: maturase Location: 1478-1700 bp Feature: domain Description: GIIM Note: maturase Location: 1478-1700 bp Feature: gene Location: 1841-2008 bp Feature: gene Location: 2067-2783 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: ANJH01000098.1 Pseudomonas syringae pv. actinidiae TP6-1 Contig098, whole genome shotgun sequence (20199 bp)
Overview 1 RT 1: 13058-18994 bp Neighborhood of RT #1 [13058, 19029] modC_ABC Top1 RVT-GII Intron_maturas2 HNHc DUF2625 Feature: gene Location: 13058-14146 bp Feature: domain Description: modC_ABC Location: 13073-14138 bp Feature: domain Description: modC_ABC Location: 13 073 -1413 8 bp Feature: gene Location: 14235-15290 bp Feature: domain Description: Top1 Location: 14268-15282 bp Feature: domain Description: Top1 Location: 14268-15282 bp Feature: gene Location: 16121-17956 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16382-17195 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 163 82-17195 bp Feature: domain Description: Intron_maturas2 Location: 17291-17606 bp Feature: domain Description: Intron_maturas2 Location: 17291-17606 bp Feature: domain Description: HNHc Note: nucleases Location: 17729-17894 bp Feature: domain Description: HNHc Note: nucleases Location: 17729-17894 bp Feature: gene Location: 18196-18387 bp Feature: gene Location: 18394-19029 bp Feature: domain Description: DUF2625 Location: 18406-18994 bp Feature: domain Description: DUF2625 Location: 18406-18994 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT modC_ABC (TIGR02142), Top1 (COG3569), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF2625 (pfam10946)

Seq: ANJH01000115.1 Pseudomonas syringae pv. actinidiae TP6-1 Contig115, whole genome shotgun sequence (16302 bp)
Overview 1 RT 1: 12330-16148 bp Neighborhood of RT #1 [12330, 16148] ComA-like_MBL-fold RVT-Retrons Feature: gene Location: 12330-13748 bp Feature: domain Description: ComA-like_MBL-fold Location: 12879-13365 bp Feature: domain Description: ComA-like_MBL-fold Location: 12879-13365 bp Feature: gene Location: 13933-14067 bp Feature: gene Location: 14192-15901 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14345-14942 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14 34 5-14 94 2 bp Feature: gene Location: 15987-16148 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ComA-like_MBL-fold (cd07731), RVT-Retrons

Seq: ANJH01000234.1 Pseudomonas syringae pv. actinidiae TP6-1 Contig234, whole genome shotgun sequence (4869 bp)
Overview 1 RT 1: 1629-3901 bp Neighborhood of RT #1 [1629, 4653] UvrD_C RVT-UG9 Feature: gene Location: 1629-2573 bp Feature: gene Location: 2934-3524 bp Feature: domain Description: UvrD_C Location: 3258-3453 bp Feature: domain Description: UvrD_C Location: 325 8-345 3 bp Feature: gene Location: 3622-4653 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3628-3901 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3628-3901 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UvrD_C (pfam13361), RVT-UG9

Seq: ANJH01000436.1 Pseudomonas syringae pv. actinidiae TP6-1 Contig436, whole genome shotgun sequence (261 bp)
Overview 1 RT 1: 2-257 bp Neighborhood of RT #1 [2, 259] RVT-GII Feature: gene Location: 2-259 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-257 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-257 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: ANJH01000469.1 Pseudomonas syringae pv. actinidiae TP6-1 Contig472, whole genome shotgun sequence (918 bp)
Overview 1 RT 1: 3-786 bp Neighborhood of RT #1 [3, 917] RVT-GII Feature: gene Location: 3-917 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 171-786 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17 1-7 86 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: ANJH01000470.1 Pseudomonas syringae pv. actinidiae TP6-1 Contig473, whole genome shotgun sequence (202 bp)
Overview 1 RT 1: 2-194 bp Neighborhood of RT #1 [2, 199] RVT-GII Feature: gene Location: 2-199 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-194 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-194 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: ANJH01000472.1 Pseudomonas syringae pv. actinidiae TP6-1 Contig479, whole genome shotgun sequence (201 bp)
Overview 1 RT 1: 1-199 bp Neighborhood of RT #1 [1, 198] RVT-GII Feature: gene Location: 1-198 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-199 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-19 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII