myRT

myRT report for GCA_000344495.1_M7PSA1.0

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Seq: ANJJ01000057.1 Pseudomonas syringae pv. actinidiae str. Shaanxi_M7 Contig057, whole genome shotgun sequence (16160 bp)
Overview 1 RT 1: 12229-16047 bp Neighborhood of RT #1 [12229, 16047] ComA-like_MBL-fold RVT-Retrons Feature: gene Location: 12229-13647 bp Feature: domain Description: ComA-like_MBL-fold Location: 12778-13264 bp Feature: domain Description: ComA-like_MBL-fold Location: 1 2778-1 3264 bp Feature: gene Location: 13832-13966 bp Feature: gene Location: 14091-15800 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14244-14841 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 4244-1 4841 bp Feature: gene Location: 15886-16047 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ComA-like_MBL-fold (cd07731), RVT-Retrons

Seq: ANJJ01000077.1 Pseudomonas syringae pv. actinidiae str. Shaanxi_M7 Contig077, whole genome shotgun sequence (15003 bp)
Overview 1 RT 1: 12838-14789 bp Neighborhood of RT #1 [12838, 14896] PAAR_motif RVT-GII GIIM Feature: gene Location: 12838-13092 bp Feature: domain Description: PAAR_motif Location: 12862-13063 bp Feature: domain Description: PAAR_motif Location: 12 862 -13063 bp Feature: gene Location: 13103-13585 bp Feature: gene Location: 13628-14896 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13832-14489 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13832 -14489 bp Feature: domain Description: GIIM Note: maturase Location: 14567-14789 bp Feature: domain Description: GIIM Note: maturase Location: 14567-14789 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PAAR_motif (pfam05488), RVT-GII, GIIM (pfam08388)

Seq: ANJJ01000087.1 Pseudomonas syringae pv. actinidiae str. Shaanxi_M7 Contig087, whole genome shotgun sequence (14201 bp)
Overview 1 RT 1: 1-1701 bp Neighborhood of RT #1 [1, 1727] RVT-GII DUF2177 Feature: gene Location: 1-579 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334-580 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 4-580 bp Feature: gene Location: 910-1275 bp Feature: gene Location: 1323-1727 bp Feature: domain Description: DUF2177 Location: 1338-1701 bp Feature: domain Description: DUF2177 Location: 13 3 8-1701 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DUF2177 (pfam09945)

Seq: ANJJ01000176.1 Pseudomonas syringae pv. actinidiae str. Shaanxi_M7 Contig176, whole genome shotgun sequence (8915 bp)
Overview 1 RT 1: 977-7153 bp Neighborhood of RT #1 [977, 7161] DUF2625 RVT-GII Intron_maturas2 HNHc Top1 modC_ABC Feature: gene Location: 977-1825 bp Feature: domain Description: DUF2625 Location: 1202-1790 bp Feature: domain Description: DUF2625 Location: 1202-1790 bp Feature: gene Location: 1832-2023 bp Feature: gene Location: 2263-4098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2524-3337 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2524 -3337 bp Feature: domain Description: Intron_maturas2 Location: 3433-3748 bp Feature: domain Description: Intron_maturas2 Location: 34 33-374 8 bp Feature: domain Description: HNHc Note: nucleases Location: 3871-4036 bp Feature: domain Description: HNHc Note: nucleases Location: 3871-4 036 bp Feature: gene Location: 4929-5984 bp Feature: domain Description: Top1 Location: 4962-5976 bp Feature: domain Description: Top1 Location: 4 962-5976 bp Feature: gene Location: 6073-7161 bp Feature: domain Description: modC_ABC Location: 6088-7153 bp Feature: domain Description: modC_ABC Location: 6088-7153 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2625 (pfam10946), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Top1 (COG3569), modC_ABC (TIGR02142)

Seq: ANJJ01000316.1 Pseudomonas syringae pv. actinidiae str. Shaanxi_M7 Contig316, whole genome shotgun sequence (6047 bp)
Overview 1 RT 1: 3-2162 bp Neighborhood of RT #1 [3, 3952] RVT-GII GIIM NERD DEXXQc_Upf1-like Feature: gene Location: 3-785 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-366 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-366 bp Feature: domain Description: GIIM Note: maturase Location: 423-651 bp Feature: domain Description: GIIM Note: maturase Location: 423-65 1 bp Feature: gene Location: 954-1214 bp Feature: gene Location: 1307-3952 bp Feature: domain Description: NERD Location: 1355-1649 bp Feature: domain Description: NERD Location: 135 5 -1649 bp Feature: domain Description: DEXXQc_Upf1-like Location: 1979-2162 bp Feature: domain Description: DEXXQc_Upf1-like Location: 1979-2162 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), NERD (pfam08378), DEXXQc_Upf1-like (cd17934)

Seq: ANJJ01000343.1 Pseudomonas syringae pv. actinidiae str. Shaanxi_M7 Contig343, whole genome shotgun sequence (5314 bp)
Overview 1 RT 1: 1625-5094 bp Neighborhood of RT #1 [1625, 5312] UvrD_C RVT-UG9 HTH_28 Feature: gene Location: 1625-2569 bp Feature: gene Location: 2930-3520 bp Feature: domain Description: UvrD_C Location: 3254-3449 bp Feature: domain Description: UvrD_C Location: 3254-3449 bp Feature: gene Location: 3618-4649 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3624-3897 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 36 24-3897 bp Feature: gene Location: 4815-5312 bp Feature: domain Description: HTH_28 Location: 4941-5094 bp Feature: domain Description: HTH_28 Location: 4941-5094 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UvrD_C (pfam13361), RVT-UG9, HTH_28 (pfam13518)

Seq: ANJJ01000952.1 Pseudomonas syringae pv. actinidiae str. Shaanxi_M7 Contig952, whole genome shotgun sequence (1265 bp)
Overview 1 RT 1: 88-1198 bp Neighborhood of RT #1 [88, 1263] RVT-GII GIIM Feature: gene Location: 88-1263 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 328-943 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 328-943 bp Feature: domain Description: GIIM Note: maturase Location: 988-1198 bp Feature: domain Description: GIIM Note: maturase Location: 988-1198 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: ANJJ01001572.1 Pseudomonas syringae pv. actinidiae str. Shaanxi_M7 Contig1622, whole genome shotgun sequence (204 bp)
Overview 1 RT 1: 2-197 bp Neighborhood of RT #1 [2, 202] RVT-GII Feature: gene Location: 2-202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-197 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-197 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII