myRT

myRT report for GCA_000344515.2_ICMP19455PSA1.0

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Seq: ANJK01000003.1 Pseudomonas syringae pv. actinidiae ICMP 19455 Contig003, whole genome shotgun sequence (80079 bp)
Overview 1 RT 1: 1-4299 bp Neighborhood of RT #1 [1, 4343] RVT-GII AtoC COG4191 Feature: gene Location: 1-579 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334-580 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334-580 bp Feature: gene Location: 1088-2425 bp Feature: domain Description: AtoC Location: 1115-2423 bp Feature: domain Description: AtoC Location: 1 1 1 5-2423 bp Feature: gene Location: 2427-4343 bp Feature: domain Description: COG4191 Location: 2496-4299 bp Feature: domain Description: COG41 91 Location: 2496-4299 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, AtoC (COG2204), COG4191 (Signal transduction histidine kinase regulating C4-dicarboxylate transport system )

Seq: ANJK01000005.1 Pseudomonas syringae pv. actinidiae ICMP 19455 Contig005, whole genome shotgun sequence (107600 bp)
Overview 1 RT 1: 105480-107343 bp Neighborhood of RT #1 [105480, 107516] YhhQ RVT-GII GIIM Feature: gene Location: 105480-105947 bp Feature: domain Description: YhhQ Location: 105555-105870 bp Feature: domain Description: YhhQ Location: 105555-105870 bp Feature: gene Location: 105946-106161 bp Feature: gene Location: 106230-107516 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 106473-107088 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 106473-107088 bp Feature: domain Description: GIIM Note: maturase Location: 107133-107343 bp Feature: domain Description: GIIM Note: maturase Location: 107133-107343 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhhQ (COG1738), RVT-GII, GIIM (pfam08388)

Seq: ANJK01000028.1 Pseudomonas syringae pv. actinidiae ICMP 19455 Contig028, whole genome shotgun sequence (48702 bp)
Overview 1 RT 1: 83-5992 bp Neighborhood of RT #1 [83, 5992] COG3666 DDE_Tnp_1_6 RVT-Retrons ComA-like_MBL-fold Feature: gene Location: 83-1306 bp Feature: domain Description: COG3666 Location: 125-566 bp Feature: domain Description: COG3 666 Location: 125-566 bp Feature: domain Description: DDE_Tnp_1_6 Location: 1043-1265 bp Feature: domain Description: DDE_Tnp_1_6 Location: 1043 -1265 bp Feature: gene Location: 1557-1718 bp Feature: gene Location: 1804-3513 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1957-2554 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1957-2554 bp Feature: gene Location: 3957-5375 bp Feature: domain Description: ComA-like_MBL-fold Location: 4506-4992 bp Feature: domain Description: ComA-like_MBL-fold Location: 4506-4992 bp Feature: gene Location: 5729-5992 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751), RVT-Retrons, ComA-like_MBL-fold (cd07731)

Seq: ANJK01000062.1 Pseudomonas syringae pv. actinidiae ICMP 19455 Contig062, whole genome shotgun sequence (26815 bp)
Overview 1 RT 1: 19620-25556 bp Neighborhood of RT #1 [19620, 25591] modC_ABC Top1 RVT-GII Intron_maturas2 HNHc DUF2625 Feature: gene Location: 19620-20708 bp Feature: domain Description: modC_ABC Location: 19635-20700 bp Feature: domain Description: modC_ABC Location: 19635-20700 bp Feature: gene Location: 20797-21852 bp Feature: domain Description: Top1 Location: 20830-21844 bp Feature: domain Description: Top1 Location: 20830-2184 4 bp Feature: gene Location: 22683-24518 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22944-23757 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2294 4 -23757 bp Feature: domain Description: Intron_maturas2 Location: 23853-24168 bp Feature: domain Description: Intron_maturas2 Location: 23853-24 168 bp Feature: domain Description: HNHc Note: nucleases Location: 24291-24456 bp Feature: domain Description: HNHc Note: nucleases Location: 24 291-24 4 56 bp Feature: gene Location: 24758-24949 bp Feature: gene Location: 24956-25591 bp Feature: domain Description: DUF2625 Location: 24968-25556 bp Feature: domain Description: DUF2625 Location: 24 968-25556 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT modC_ABC (TIGR02142), Top1 (COG3569), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF2625 (pfam10946)

Seq: ANJK01000085.1 Pseudomonas syringae pv. actinidiae ICMP 19455 Contig085, whole genome shotgun sequence (22910 bp)
Overview 1 RT 1: 108-3368 bp Neighborhood of RT #1 [108, 3373] RVT-GII GIIM DDE_Tnp_1_6 PQQ_membr_DH Feature: gene Location: 108-1376 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 312-969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 312-969 bp Feature: domain Description: GIIM Note: maturase Location: 1047-1269 bp Feature: domain Description: GIIM Note: maturase Location: 1047-1269 bp Feature: gene Location: 1458-1682 bp Feature: domain Description: DDE_Tnp_1_6 Location: 1488-1635 bp Feature: domain Description: DDE_Tnp_1_6 Location: 1488-1635 bp Feature: gene Location: 1898-3373 bp Feature: domain Description: PQQ_membr_DH Location: 1901-3368 bp Feature: domain Description: PQQ_membr_DH Location: 1901-3368 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_1_6 (pfam13751), PQQ_membr_DH (TIGR03074)

Seq: ANJK01000208.1 Pseudomonas syringae pv. actinidiae ICMP 19455 Contig208, whole genome shotgun sequence (4909 bp)
Overview 1 RT 1: 240-3264 bp Neighborhood of RT #1 [240, 3264] RVT-UG9 UvrD_C Feature: gene Location: 240-1271 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 246-519 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 246 -519 bp Feature: gene Location: 1369-1959 bp Feature: domain Description: UvrD_C Location: 1693-1888 bp Feature: domain Description: UvrD_C Location: 16 93-1888 bp Feature: gene Location: 2320-3264 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG9, UvrD_C (pfam13361)

Seq: ANJK01000363.1 Pseudomonas syringae pv. actinidiae ICMP 19455 Contig363, whole genome shotgun sequence (261 bp)
Overview 1 RT 1: 2-257 bp Neighborhood of RT #1 [2, 259] RVT-GII Feature: gene Location: 2-259 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-257 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-257 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: ANJK01000364.1 Pseudomonas syringae pv. actinidiae ICMP 19455 Contig364, whole genome shotgun sequence (254 bp)
Overview 1 RT 1: 2-254 bp Neighborhood of RT #1 [2, 253] RVT-GII Feature: gene Location: 2-253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-254 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-254 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: ANJK01000365.1 Pseudomonas syringae pv. actinidiae ICMP 19455 Contig365, whole genome shotgun sequence (257 bp)
Overview 1 RT 1: 2-257 bp Neighborhood of RT #1 [2, 256] RVT-GII Feature: gene Location: 2-256 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-257 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-257 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: ANJK01000370.1 Pseudomonas syringae pv. actinidiae ICMP 19455 Contig370, whole genome shotgun sequence (435 bp)
Overview 1 RT 1: 1-433 bp Neighborhood of RT #1 [1, 432] RVT-GII GIIM Feature: gene Location: 1-432 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-229 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-229 bp Feature: domain Description: GIIM Note: maturase Location: 286-433 bp Feature: domain Description: GIIM Note: maturase Location: 286-433 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: ANJK01000372.1 Pseudomonas syringae pv. actinidiae ICMP 19455 Contig372, whole genome shotgun sequence (253 bp)
Overview 1 RT 1: 2-230 bp Neighborhood of RT #1 [2, 250] RVT-GII Feature: gene Location: 2-250 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-230 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: ANJK01000383.1 Pseudomonas syringae pv. actinidiae ICMP 19455 Contig383, whole genome shotgun sequence (241 bp)
Overview 1 RT 1: 2-233 bp Neighborhood of RT #1 [2, 238] RVT-GII Feature: gene Location: 2-238 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74-233 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74-233 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII