myRT

myRT report for GCA_000344555.1_ICMP19439PSA1.0

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Seq: ANJM01000010.1 Pseudomonas syringae pv. actinidiae ICMP 19439 Contig010, whole genome shotgun sequence (79467 bp)
Overview 1 RT 1: 75125-79465 bp Neighborhood of RT #1 [75125, 79464] COG4191 AtoC RVT-GII Feature: gene Location: 75125-77041 bp Feature: domain Description: COG4191 Location: 75194-76997 bp Feature: domain Description: COG41 91 Location: 751 94-76997 bp Feature: gene Location: 77043-78380 bp Feature: domain Description: AtoC Location: 77070-78378 bp Feature: domain Description: AtoC Location: 77070-78378 bp Feature: gene Location: 78889-79464 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79222-79465 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79222-79465 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4191 (Signal transduction histidine kinase regulating C4-dicarboxylate transport system ), AtoC (COG2204), RVT-GII

Seq: ANJM01000013.1 Pseudomonas syringae pv. actinidiae ICMP 19439 Contig013, whole genome shotgun sequence (55774 bp)
Overview 1 RT 1: 50783-55517 bp Neighborhood of RT #1 [50783, 55690] GAF PAS PRK10060 PRK00058 RVT-GII GIIM Feature: gene Location: 50783-53476 bp Feature: domain Description: GAF Location: 51362-51776 bp Feature: domain Description: GAF Location: 51362 -51776 bp Feature: domain Description: PAS Location: 51821-51992 bp Feature: domain Description: PAS Location: 5182 1-51992 bp Feature: domain Description: PRK10060 Location: 52127-53456 bp Feature: domain Description: PRK10060 Location: 52 12 7-53456 bp Feature: gene Location: 53623-54270 bp Feature: domain Description: PRK00058 Location: 53644-54265 bp Feature: domain Description: PRK00058 Location: 53644-542 65 bp Feature: gene Location: 54404-55690 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54647-55262 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54647-552 62 bp Feature: domain Description: GIIM Note: maturase Location: 55307-55517 bp Feature: domain Description: GIIM Note: maturase Location: 55307-55517 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GAF (smart00065), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK00058 (peptide-methionine (S)-S-oxide reductase MsrA), RVT-GII, GIIM (pfam08388)

Seq: ANJM01000014.1 Pseudomonas syringae pv. actinidiae ICMP 19439 Contig014, whole genome shotgun sequence (47340 bp)
Overview 1 RT 1: 153-4588 bp Neighborhood of RT #1 [153, 4588] RVT-Retrons ComA-like_MBL-fold Feature: gene Location: 153-314 bp Feature: gene Location: 400-2109 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 553-1150 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 553 -1150 bp Feature: gene Location: 2553-3971 bp Feature: domain Description: ComA-like_MBL-fold Location: 3102-3588 bp Feature: domain Description: ComA-like_MBL-fold Location: 3 102-3 588 bp Feature: gene Location: 4325-4588 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, ComA-like_MBL-fold (cd07731)

Seq: ANJM01000048.1 Pseudomonas syringae pv. actinidiae ICMP 19439 Contig048, whole genome shotgun sequence (39129 bp)
Overview 1 RT 1: 30395-36331 bp Neighborhood of RT #1 [30395, 36366] modC_ABC Top1 RVT-GII Intron_maturas2 HNHc DUF2625 Feature: gene Location: 30395-31483 bp Feature: domain Description: modC_ABC Location: 30410-31475 bp Feature: domain Description: modC_ABC Location: 304 10-314 75 bp Feature: gene Location: 31572-32627 bp Feature: domain Description: Top1 Location: 31605-32619 bp Feature: domain Description: Top1 Location: 31605-32619 bp Feature: gene Location: 33458-35293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33719-34532 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33719-34 532 bp Feature: domain Description: Intron_maturas2 Location: 34628-34943 bp Feature: domain Description: Intron_maturas2 Location: 34 628-34 94 3 bp Feature: domain Description: HNHc Note: nucleases Location: 35066-35231 bp Feature: domain Description: HNHc Note: nucleases Location: 35066-35231 bp Feature: gene Location: 35533-35724 bp Feature: gene Location: 35731-36366 bp Feature: domain Description: DUF2625 Location: 35743-36331 bp Feature: domain Description: DUF2625 Location: 3574 3-36331 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT modC_ABC (TIGR02142), Top1 (COG3569), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF2625 (pfam10946)

Seq: ANJM01000053.1 Pseudomonas syringae pv. actinidiae ICMP 19439 Contig053, whole genome shotgun sequence (32570 bp)
Overview 1 RT 1: 108-2352 bp Neighborhood of RT #1 [108, 2352] RVT-GII GIIM Feature: gene Location: 108-1376 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 312-969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 312-969 bp Feature: domain Description: GIIM Note: maturase Location: 1047-1269 bp Feature: domain Description: GIIM Note: maturase Location: 1047-1269 bp Feature: gene Location: 1410-1577 bp Feature: gene Location: 1636-2352 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: ANJM01000214.1 Pseudomonas syringae pv. actinidiae ICMP 19439 Contig214, whole genome shotgun sequence (4855 bp)
Overview 1 RT 1: 179-3203 bp Neighborhood of RT #1 [179, 3203] RVT-UG9 UvrD_C Feature: gene Location: 179-1210 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 185-458 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 185-458 bp Feature: gene Location: 1308-1898 bp Feature: domain Description: UvrD_C Location: 1632-1827 bp Feature: domain Description: UvrD_C Location: 16 32-1827 bp Feature: gene Location: 2259-3203 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG9, UvrD_C (pfam13361)

Seq: ANJM01000414.1 Pseudomonas syringae pv. actinidiae ICMP 19439 Contig414, whole genome shotgun sequence (261 bp)
Overview 1 RT 1: 2-257 bp Neighborhood of RT #1 [2, 259] RVT-GII Feature: gene Location: 2-259 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-257 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-257 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: ANJM01000416.1 Pseudomonas syringae pv. actinidiae ICMP 19439 Contig416, whole genome shotgun sequence (258 bp)
Overview 1 RT 1: 2-257 bp Neighborhood of RT #1 [2, 256] RVT-GII Feature: gene Location: 2-256 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-257 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-257 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: ANJM01000417.1 Pseudomonas syringae pv. actinidiae ICMP 19439 Contig417, whole genome shotgun sequence (253 bp)
Overview 1 RT 1: 2-251 bp Neighborhood of RT #1 [2, 250] RVT-GII Feature: gene Location: 2-250 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-251 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-251 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: ANJM01000419.1 Pseudomonas syringae pv. actinidiae ICMP 19439 Contig419, whole genome shotgun sequence (252 bp)
Overview 1 RT 1: 3-231 bp Neighborhood of RT #1 [3, 251] RVT-GII Feature: gene Location: 3-251 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-231 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-231 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: ANJM01000424.1 Pseudomonas syringae pv. actinidiae ICMP 19439 Contig424, whole genome shotgun sequence (255 bp)
Overview 1 RT 1: 1-229 bp Neighborhood of RT #1 [1, 252] RVT-GII Feature: gene Location: 1-252 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-229 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-229 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII