myRT

myRT report for GCA_000346485.2_ASM34648v2

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Seq: KQ976354.1 Scytonema hofmannii PCC 7110 genomic scaffold Scaffold1, whole genome shotgun sequence (11632038 bp)
Overview 1 RT 1: 456951-464350 bp 2 RT 2: 542104-546273 bp 3 RT 3: 1410852-1417174 bp 4 RT 4: 2208346-2216211 bp 5 RT 5: 2283213-2287372 bp 6 RT 6: 3427789-3432983 bp 7 RT 7: 4245797-4250436 bp 8 RT 8: 5527341-5532202 bp 9 RT 9: 6386898-6391546 bp 10 RT 10: 7657811-7662389 bp 11 RT 11: 8556454-8561881 bp 12 RT 12: 9126415-9135191 bp 13 RT 13: 9939856-9944370 bp 14 RT 14: 10128620-10132016 bp 15 RT 15: 10210127-10213789 bp Neighborhood of RT #1 [456951, 464448] HTH_XRE HTH_XRE DUF4384 RVT-CRISPR cas1 COG3791 PT-HINT GIY-YIG Neighborhood of RT #2 [542104, 546395] SBD RVT_N RVT-GII RVT-GII McrA ParG CHAT Neighborhood of RT #3 [1410852, 1417182] InsQ RVT_N RVT-GII RVT-GII McrA InsQ NHLM_micro_ABC2 Neighborhood of RT #4 [2208346, 2216267] RVT-CRISPR cas1 RVT-CRISPR DUF4384 TPR_12 TPR_12 TPR_12 TPR_12 TPR_12 TPR_12 TPR_12 TPR_10 CHAT Neighborhood of RT #5 [2283213, 2287372] PBP2_YvgL_like RVT_N RVT-GII GIIM HNHc Neighborhood of RT #6 [3427789, 3432983] YfmG Avd_like RVT-DGRs Neighborhood of RT #7 [4245797, 4250436] CypX RVT_N RVT-GII GIIM HNHc Neighborhood of RT #8 [5527341, 5532202] STKc_PknB_like RVT_N RVT-GII RVT-GII McrA Neighborhood of RT #9 [6386898, 6391584] TIGR03985 SpoT RVT-CRISPR Cas1_I-II-III Cas2_I_II_III Neighborhood of RT #10 [7657811, 7662389] COG5421 RVT-GII GIIM HNHc RVT_N Neighborhood of RT #11 [8556454, 8561922] Cas1_I-II-III RVT-CRISPR M48B_HtpX_like TIGR03985 Neighborhood of RT #12 [9126415, 9135208] TldD TldD RVT_N RVT-GII RVT-GII GIIM HTH_ARSR clpC HisD Neighborhood of RT #13 [9939856, 9944417] PRK05957 RVT_N RVT-GII RVT-GII McrA YjbQ SDR_a5 Neighborhood of RT #14 [10128620, 10132016] COG4586 YfmG RVT-DGRs Avd_like Neighborhood of RT #15 [10210127, 10213881] YfmG Avd_like RVT-DGRs fliH Feature: gene Location: 456951-457523 bp Feature: domain Description: HTH_XRE Location: 457203-457359 bp Feature: domain Description: HTH_XRE Location: 457203-457359 bp Feature: gene Location: 457904-458653 bp Feature: domain Description: HTH_XRE Location: 457949-458108 bp Feature: domain Description: HTH_XRE Location: 457949-4581 08 bp Feature: domain Description: DUF4384 Location: 458279-458513 bp Feature: domain Description: DUF4384 Location: 458279-45851 3 bp Feature: gene Location: 458787-460808 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 458979-459585 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 458979-459585 bp Feature: domain Description: cas1 Location: 459801-460779 bp Feature: domain Description: cas1 Location: 459801 -460779 bp Feature: gene Location: 462483-462968 bp Feature: domain Description: COG3791 Location: 462531-462882 bp Feature: domain Description: COG3791 Location: 462531 -462882 bp Feature: gene Location: 463258-464448 bp Feature: domain Description: PT-HINT Location: 463750-464134 bp Feature: domain Description: PT-HINT Location: 463750-4641 34 bp Feature: domain Description: GIY-YIG Location: 464158-464350 bp Feature: domain Description: GIY-YIG Location: 4641 58-464350 bp Feature: gene Location: 542104-542883 bp Feature: domain Description: SBD Location: 542485-542863 bp Feature: domain Description: SBD Location: 542485-542863 bp Feature: gene Location: 543089-543238 bp Feature: gene Location: 543515-545029 bp Feature: domain Description: RVT_N Location: 543551-543797 bp Feature: domain Description: RVT_N Location: 543551 -543797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 543848-544277 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 543848-544277 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 544277-544442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 544277-544442 bp Feature: domain Description: McrA Location: 544673-544997 bp Feature: domain Description: McrA Location: 544673-544997 bp Feature: gene Location: 545239-545409 bp Feature: domain Description: ParG Location: 545260-545356 bp Feature: domain Description: ParG Location: 545260-545356 bp Feature: gene Location: 545520-546395 bp Feature: domain Description: CHAT Location: 545886-546273 bp Feature: domain Description: CHAT Location: 545886-546273 bp Feature: gene Location: 1410852-1411679 bp Feature: domain Description: InsQ Location: 1410888-1411602 bp Feature: domain Description: InsQ Location: 1 41 0888-1 41 1 602 bp Feature: gene Location: 1411699-1411881 bp Feature: gene Location: 1412158-1413669 bp Feature: domain Description: RVT_N Location: 1412194-1412440 bp Feature: domain Description: RVT_N Location: 1 41 21 94-1 41 2440 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1412494-1412917 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 41 2494-1 41 291 7 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1412917-1413085 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 41 291 7-1 41 3085 bp Feature: domain Description: McrA Location: 1413322-1413640 bp Feature: domain Description: McrA Location: 1 41 3322-1 41 3640 bp Feature: gene Location: 1413847-1414224 bp Feature: domain Description: InsQ Location: 1413850-1414132 bp Feature: domain Description: InsQ Location: 1 41 3850-1 41 41 32 bp Feature: gene Location: 1414228-1417182 bp Feature: domain Description: NHLM_micro_ABC2 Location: 1415089-1417174 bp Feature: domain Description: NHLM_micro_ABC2 Location: 1 41 5089-1 41 71 74 bp Feature: gene Location: 2208346-2208549 bp Feature: gene Location: 2208673-2208903 bp Feature: gene Location: 2209207-2211147 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2209360-2209936 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2209360-2209936 bp Feature: domain Description: cas1 Location: 2210152-2211118 bp Feature: domain Description: cas1 Location: 221 01 52-221 1 1 1 8 bp Feature: gene Location: 2210951-2211289 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2211137-2211206 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 221 1 1 37-221 1 206 bp Feature: gene Location: 2211547-2212299 bp Feature: domain Description: DUF4384 Location: 2211928-2212162 bp Feature: domain Description: DUF4384 Location: 221 1 928-221 21 62 bp Feature: gene Location: 2212413-2216267 bp Feature: domain Description: TPR_12 Location: 2212497-2212713 bp Feature: domain Description: TPR_1 2 Location: 221 2497-221 271 3 bp Feature: domain Description: TPR_12 Location: 2212740-2212965 bp Feature: domain Description: TPR_1 2 Location: 221 2740-221 2965 bp Feature: domain Description: TPR_12 Location: 2213007-2213223 bp Feature: domain Description: TPR_1 2 Location: 221 3007-221 3223 bp Feature: domain Description: TPR_12 Location: 2213250-2213472 bp Feature: domain Description: TPR_1 2 Location: 221 3250-221 3472 bp Feature: domain Description: TPR_12 Location: 2213499-2213724 bp Feature: domain Description: TPR_1 2 Location: 221 3499-221 3724 bp Feature: domain Description: TPR_12 Location: 2213754-2213973 bp Feature: domain Description: TPR_1 2 Location: 221 3754-221 3973 bp Feature: domain Description: TPR_12 Location: 2214003-2214159 bp Feature: domain Description: TPR_1 2 Location: 221 4003-221 41 59 bp Feature: domain Description: TPR_10 Location: 2214258-2214327 bp Feature: domain Description: TPR_1 0 Location: 221 4258-221 4327 bp Feature: domain Description: CHAT Location: 2215089-2216211 bp Feature: domain Description: CHAT Location: 221 5089-221 621 1 bp Feature: gene Location: 2283213-2284088 bp Feature: domain Description: PBP2_YvgL_like Location: 2283411-2284077 bp Feature: domain Description: PBP2_YvgL_like Location: 228341 1 -2284077 bp Feature: gene Location: 2284252-2284527 bp Feature: gene Location: 2285048-2286832 bp Feature: domain Description: RVT_N Location: 2285129-2285369 bp Feature: domain Description: RVT_N Location: 22851 29-2285369 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2285423-2286104 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2285423-22861 04 bp Feature: domain Description: GIIM Note: maturase Location: 2286170-2286389 bp Feature: domain Description: GIIM Note: maturase Location: 22861 70-2286389 bp Feature: domain Description: HNHc Note: nucleases Location: 2286632-2286785 bp Feature: domain Description: HNHc Note: nucleases Location: 2286632-2286785 bp Feature: gene Location: 2286891-2287148 bp Feature: gene Location: 2287178-2287372 bp Feature: gene Location: 3427789-3430404 bp Feature: domain Description: YfmG Location: 3429514-3430387 bp Feature: domain Description: YfmG Location: 342951 4-3430387 bp Feature: gene Location: 3430703-3431041 bp Feature: domain Description: Avd_like Location: 3430721-3431027 bp Feature: domain Description: Avd_like Location: 3430721 -3431 027 bp Feature: gene Location: 3431063-3432121 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3431267-3431915 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3431 267-3431 91 5 bp Feature: gene Location: 3432261-3432557 bp Feature: gene Location: 3432708-3432983 bp Feature: gene Location: 4245797-4246096 bp Feature: domain Description: CypX Location: 4245803-4246076 bp Feature: domain Description: CypX Location: 4245803-4246076 bp Feature: gene Location: 4246126-4246332 bp Feature: gene Location: 4246354-4248318 bp Feature: domain Description: RVT_N Location: 4246480-4246726 bp Feature: domain Description: RVT_N Location: 4246480-4246726 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4246768-4247467 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4246768-4247467 bp Feature: domain Description: GIIM Note: maturase Location: 4247572-4247782 bp Feature: domain Description: GIIM Note: maturase Location: 4247572-4247782 bp Feature: domain Description: HNHc Note: nucleases Location: 4248001-4248166 bp Feature: domain Description: HNHc Note: nucleases Location: 4248001 -42481 66 bp Feature: gene Location: 4248785-4249021 bp Feature: gene Location: 4249033-4250436 bp Feature: gene Location: 5527341-5527541 bp Feature: gene Location: 5527782-5529356 bp Feature: domain Description: STKc_PknB_like Location: 5527821-5528649 bp Feature: domain Description: STKc_PknB_like Location: 5527821 -5528649 bp Feature: gene Location: 5529493-5531004 bp Feature: domain Description: RVT_N Location: 5529529-5529775 bp Feature: domain Description: RVT_N Location: 5529529-5529775 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5529826-5530255 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5529826-5530255 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5530255-5530420 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5530255-5530420 bp Feature: domain Description: McrA Location: 5530654-5530975 bp Feature: domain Description: McrA Location: 5530654-5530975 bp Feature: gene Location: 5531121-5531351 bp Feature: gene Location: 5531753-5532202 bp Feature: gene Location: 6386898-6388421 bp Feature: domain Description: TIGR03985 Location: 6387645-6388419 bp Feature: domain Description: TIGR03985 Location: 6387645-638841 9 bp Feature: gene Location: 6388393-6389028 bp Feature: domain Description: SpoT Location: 6388444-6388939 bp Feature: domain Description: SpoT Location: 6388444-6388939 bp Feature: gene Location: 6389102-6390079 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 6389318-6389924 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 638931 8-6389924 bp Feature: gene Location: 6390190-6391308 bp Feature: domain Description: Cas1_I-II-III Location: 6390316-6391270 bp Feature: domain Description: Cas1 _I-II-III Location: 639031 6-6391 270 bp Feature: gene Location: 6391309-6391584 bp Feature: domain Description: Cas2_I_II_III Location: 6391318-6391546 bp Feature: domain Description: Cas2_I_II_III Location: 6391 31 8-6391 546 bp Feature: gene Location: 7657811-7659433 bp Feature: domain Description: COG5421 Location: 7657844-7659341 bp Feature: domain Description: COG5421 Location: 7657844-7659341 bp Feature: gene Location: 7660024-7660164 bp Feature: gene Location: 7660677-7661897 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7660710-7661034 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 766071 0-7661 034 bp Feature: domain Description: GIIM Note: maturase Location: 7661139-7661370 bp Feature: domain Description: GIIM Note: maturase Location: 7661 1 39-7661 370 bp Feature: domain Description: HNHc Note: nucleases Location: 7661565-7661721 bp Feature: domain Description: HNHc Note: nucleases Location: 7661 565-7661 721 bp Feature: gene Location: 7661921-7662187 bp Feature: domain Description: RVT_N Location: 7661957-7662140 bp Feature: domain Description: RVT_N Location: 7661 957-76621 40 bp Feature: gene Location: 7662240-7662389 bp Feature: gene Location: 8556454-8556624 bp Feature: gene Location: 8556826-8557830 bp Feature: domain Description: Cas1_I-II-III Location: 8556838-8557792 bp Feature: domain Description: Cas1 _I-II-III Location: 8556838-8557792 bp Feature: gene Location: 8558004-8558957 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 8558211-8558817 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 855821 1 -855881 7 bp Feature: gene Location: 8559042-8560133 bp Feature: domain Description: M48B_HtpX_like Location: 8559273-8560113 bp Feature: domain Description: M48B_HtpX_like Location: 8559273-85601 1 3 bp Feature: gene Location: 8560261-8561922 bp Feature: domain Description: TIGR03985 Location: 8561146-8561881 bp Feature: domain Description: TIGR03985 Location: 8561 1 46-8561 881 bp Feature: gene Location: 9126415-9127887 bp Feature: domain Description: TldD Location: 9126514-9127882 bp Feature: domain Description: TldD Location: 91 2651 4-91 27882 bp Feature: gene Location: 9128021-9129364 bp Feature: domain Description: TldD Location: 9128042-9129359 bp Feature: domain Description: TldD Location: 91 28042-91 29359 bp Feature: gene Location: 9131343-9132575 bp Feature: domain Description: RVT_N Location: 9131382-9131628 bp Feature: domain Description: RVT_N Location: 91 31 382-91 31 628 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9131679-9132105 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 31 679-91 321 05 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9132108-9132273 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 321 08-91 32273 bp Feature: domain Description: GIIM Note: maturase Location: 9132330-9132444 bp Feature: domain Description: GIIM Note: maturase Location: 91 32330-91 32444 bp Feature: gene Location: 9132823-9133698 bp Feature: domain Description: HTH_ARSR Location: 9132862-9133090 bp Feature: domain Description: HTH_ARSR Location: 91 32862-91 33090 bp Feature: domain Description: clpC Location: 9133261-9133681 bp Feature: domain Description: clpC Location: 91 33261 -91 33681 bp Feature: gene Location: 9133880-9135208 bp Feature: domain Description: HisD Location: 9133940-9135191 bp Feature: domain Description: HisD Location: 91 33940-91 351 91 bp Feature: gene Location: 9939856-9941022 bp Feature: domain Description: PRK05957 Location: 9939859-9941011 bp Feature: domain Description: PRK05957 Location: 9939859-9941 01 1 bp Feature: gene Location: 9941175-9941357 bp Feature: gene Location: 9941634-9943145 bp Feature: domain Description: RVT_N Location: 9941670-9941916 bp Feature: domain Description: RVT_N Location: 9941 670-9941 91 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9941970-9942393 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9941 970-9942393 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9942393-9942561 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9942393-9942561 bp Feature: domain Description: McrA Location: 9942798-9943116 bp Feature: domain Description: McrA Location: 9942798-99431 1 6 bp Feature: gene Location: 9943242-9943682 bp Feature: domain Description: YjbQ Location: 9943245-9943677 bp Feature: domain Description: YjbQ Location: 9943245-9943677 bp Feature: gene Location: 9943740-9944417 bp Feature: domain Description: SDR_a5 Location: 9943761-9944370 bp Feature: domain Description: SDR_a5 Location: 9943761 -9944370 bp Feature: gene Location: 10128620-10129621 bp Feature: domain Description: COG4586 Location: 10128626-10129592 bp Feature: domain Description: COG4586 Location: 1 01 28626-1 01 29592 bp Feature: gene Location: 10129877-10130122 bp Feature: domain Description: YfmG Location: 10129883-10129985 bp Feature: domain Description: YfmG Location: 1 01 29883-1 01 29985 bp Feature: gene Location: 10130148-10131218 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 10130361-10131000 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 01 30361 -1 01 31 000 bp Feature: gene Location: 10131345-10131692 bp Feature: domain Description: Avd_like Location: 10131363-10131669 bp Feature: domain Description: Avd_like Location: 1 01 31 363-1 01 31 669 bp Feature: gene Location: 10131876-10132016 bp Feature: gene Location: 10210127-10210972 bp Feature: domain Description: YfmG Location: 10210193-10210952 bp Feature: domain Description: YfmG Location: 1 021 01 93-1 021 0952 bp Feature: gene Location: 10211142-10211498 bp Feature: domain Description: Avd_like Location: 10211160-10211469 bp Feature: domain Description: Avd_like Location: 1 021 1 1 60-1 021 1 469 bp Feature: gene Location: 10211512-10212570 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 10211716-10212361 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 021 1 71 6-1 021 2361 bp Feature: gene Location: 10212509-10212877 bp Feature: gene Location: 10212916-10213881 bp Feature: domain Description: fliH Location: 10213594-10213789 bp Feature: domain Description: fliH Location: 1 021 3594-1 021 3789 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), DUF4384 (pfam14326), RVT-CRISPR, cas1 (TIGR00287), COG3791 (Uncharacterized conserved protein ), PT-HINT (pfam07591), GIY-YIG (pfam01541), SBD (pfam17882), RVT_N (pfam13655), RVT-GII
McrA (COG4058), ParG (pfam09274), CHAT (pfam12770), InsQ (COG0675), NHLM_micro_ABC2 (TIGR03797), TPR_12 (pfam13424), TPR_10 (pfam13374), PBP2_YvgL_like (cd13537), GIIM (pfam08388), HNHc (smart00507)
YfmG (COG1262), Avd_like (cd16376), RVT-DGRs, CypX (COG2124), STKc_PknB_like (cd14014), TIGR03985 (CRISPR-associated protein, TIGR03985 family), SpoT (COG0317), Cas1_I-II-III (cl00656), Cas2_I_II_III (cl11442), COG5421 (Transposase )
M48B_HtpX_like (cd07339), TldD (COG0312), HTH_ARSR (smart00418), clpC, HisD (COG0141), PRK05957 (pyridoxal phosphate-dependent aminotransferase), YjbQ (COG0432), SDR_a5 (cd05243), COG4586 (ABC-type uncharacterized transport system, ATPase component ), fliH (PRK13386)

Seq: KQ976359.1 Scytonema hofmannii PCC 7110 genomic scaffold Scaffold6, whole genome shotgun sequence (6659 bp)
Overview 1 RT 1: 4587-6143 bp Neighborhood of RT #1 [4587, 6658] RVT-UG20 Feature: gene Location: 4587-4964 bp Feature: gene Location: 5001-5273 bp Feature: gene Location: 5339-6658 bp Feature: RT Description: RVT-UG20 Note: UG20 RT Location: 5654-6143 bp Feature: RT Description: RVT-UG2 0 Note: UG2 0 RT Location: 5654-6143 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG20