myRT

myRT report for GCA_000349725.1_ASM34972v1

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Seq: APCP01000066.1 Lactobacillus pobuzihii E100301 = KCTC 13174 strain E100301 contig_68, whole genome shotgun sequence (37558 bp)
Overview 1 RT 1: 16077-20425 bp 2 RT 2: 34099-37556 bp Neighborhood of RT #1 [16077, 20425] MobA_MobL NES_C_h NES_C_h DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII Neighborhood of RT #2 [34099, 37555] ParAB_family RVT-GII GIIM zeta_crystallin Feature: gene Location: 16077-18134 bp Feature: domain Description: MobA_MobL Location: 16128-16791 bp Feature: domain Description: MobA_MobL Location: 1 61 28-1 6791 bp Feature: domain Description: NES_C_h Location: 16902-17226 bp Feature: domain Description: NES_C_h Location: 1 6902-1 7226 bp Feature: domain Description: NES_C_h Location: 17430-17604 bp Feature: domain Description: NES_C_h Location: 1 7430-1 7604 bp Feature: gene Location: 18532-19020 bp Feature: domain Description: DDE_Tnp_IS66 Location: 18538-18835 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 8538-1 8835 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 18853-18976 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 8853-1 8976 bp Feature: gene Location: 19289-19747 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19607-19733 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 9607-1 9733 bp Feature: gene Location: 19753-19902 bp Feature: gene Location: 20291-20425 bp Feature: gene Location: 34099-34917 bp Feature: domain Description: ParAB_family Location: 34144-34738 bp Feature: domain Description: ParAB_family Location: 341 44-34738 bp Feature: gene Location: 35378-35584 bp Feature: gene Location: 35627-37021 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35954-36572 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35954-36572 bp Feature: domain Description: GIIM Note: maturase Location: 36626-36842 bp Feature: domain Description: GIIM Note: maturase Location: 36626-36842 bp Feature: gene Location: 37223-37555 bp Feature: domain Description: zeta_crystallin Location: 37226-37556 bp Feature: domain Description: zeta_crystallin Location: 37226-37556 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MobA_MobL (pfam03389), NES_C_h (pfam18208), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-GII, ParAB_family (cd02042), GIIM (pfam08388), zeta_crystallin (cd08253)