myRT

myRT report for GCA_000350045.2_C43_90_IrSpV01

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Seq: AHAW01000006.1 Escherichia coli O127:H27 str. C43/90 NODE_27, whole genome shotgun sequence (70732 bp)
Overview 1 RT 1: 46679-52687 bp Neighborhood of RT #1 [46679, 52704] proA PRK09692 RVT-UG7 Psu Feature: gene Location: 46679-47932 bp Ori: EMS10440.1 Gene: proA Feature: domain Description: proA Location: 46706-47897 bp Feature: domain Description: proA Location: 46706-47897 bp Feature: gene Location: 48287-49471 bp Ori: EMS10441.1 Feature: domain Description: PRK09692 Location: 48293-49448 bp Feature: domain Description: PRK09692 Location: 48293-49448 bp Feature: gene Location: 49464-51092 bp Ori: EMS10442.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 49872-50301 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 49872-50301 bp Feature: gene Location: 51089-51829 bp Feature: gene Location: 52132-52704 bp Ori: EMS10444.1 Feature: domain Description: Psu Location: 52150-52687 bp Feature: domain Description: Psu Location: 521 50-52687 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT proA (TIGR00407), PRK09692 (Integrase; provisional), RVT-UG7, Psu (pfam07455)

Seq: AHAW01000075.1 Escherichia coli O127:H27 str. C43/90 NODE_49, whole genome shotgun sequence (24829 bp)
Overview 1 RT 1: 1-2460 bp Neighborhood of RT #1 [1, 2492] RVT-GII PHA02517 HTH_38 Tra8 Feature: gene Location: 1-622 bp Ori: EMS03283.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 274-616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 74-616 bp Feature: gene Location: 1214-1453 bp Ori: EMS03284.1 Gene: insO Feature: domain Description: PHA02517 Location: 1217-1388 bp Feature: domain Description: PHA02 517 Location: 12 17-1388 bp Feature: gene Location: 1770-2492 bp Ori: EMS03285.1 Gene: insI Feature: domain Description: HTH_38 Location: 1779-1893 bp Feature: domain Description: HTH_38 Location: 1779-1893 bp Feature: domain Description: Tra8 Location: 1929-2460 bp Feature: domain Description: Tra8 Location: 192 9-2 460 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PHA02517 (putative transposase OrfB; Reviewed), HTH_38 (pfam13936), Tra8 (COG2826)

Seq: AHAW01000069.1 Escherichia coli O127:H27 str. C43/90 NODE_13, whole genome shotgun sequence (65258 bp)
Overview 1 RT 1: 22316-26670 bp Neighborhood of RT #1 [22316, 26693] HTH_XRE RVT-Retrons PRK13889 TraD Feature: gene Location: 22316-22531 bp Feature: gene Location: 22622-22903 bp Ori: EMS04060.1 Feature: domain Description: HTH_XRE Location: 22637-22802 bp Feature: domain Description: HTH_XRE Location: 2263 7-22802 bp Feature: gene Location: 22896-23996 bp Ori: EMS04061.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23037-23589 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23 03 7-23 589 bp Feature: gene Location: 24073-25575 bp Ori: EMS04062.1 Feature: domain Description: PRK13889 Location: 24076-24655 bp Feature: domain Description: PRK13 889 Location: 24076-24655 bp Feature: gene Location: 26382-26693 bp Ori: EMS04063.1 Feature: domain Description: TraD Location: 26496-26670 bp Feature: domain Description: TraD Location: 26496-26670 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, PRK13889 (conjugal transfer relaxase TraA; Provisional), TraD (pfam06412)

Seq: AHAW01000068.1 Escherichia coli O127:H27 str. C43/90 NODE_57, whole genome shotgun sequence (66282 bp)
Overview 1 RT 1: 62894-66037 bp Neighborhood of RT #1 [62894, 66282] fecE RVT-GII GIIM Feature: gene Location: 62894-63661 bp Ori: EMS04274.1 Gene: fecE Feature: domain Description: fecE Location: 62897-63659 bp Feature: domain Description: fecE Location: 62897-63659 bp Feature: gene Location: 64220-64477 bp Feature: gene Location: 65128-66282 bp Ori: EMS04276.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65131-65764 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65131-65764 bp Feature: domain Description: GIIM Note: maturase Location: 65839-66037 bp Feature: domain Description: GIIM Note: maturase Location: 65839-66037 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT fecE (PRK11231), RVT-GII, GIIM (pfam08388)