myRT

myRT report for GCA_000350685.1_Esch_coli_KTE10_V1

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Seq: KB732238.1 Escherichia coli KTE10 genomic scaffold acEvd-supercont1.2, whole genome shotgun sequence (3722391 bp)
Overview 1 RT 1: 2314592-2321110 bp 2 RT 2: 2927036-2932883 bp Neighborhood of RT #1 [2314592, 2321121] DDE_Tnp_IS66_C IS285 RVT-GII GIIM PHA02517 HTH_38 Tra8 Neighborhood of RT #2 [2927036, 2932888] HNH RVT-Retrons Q P Feature: gene Location: 2314592-2315371 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2315243-2315354 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 231 5243-231 5354 bp Feature: gene Location: 2315589-2316887 bp Feature: domain Description: IS285 Location: 2315619-2316777 bp Feature: domain Description: IS285 Location: 231 561 9-231 6777 bp Feature: gene Location: 2317354-2318877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2317627-2318359 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 231 7627-231 8359 bp Feature: domain Description: GIIM Note: maturase Location: 2318434-2318632 bp Feature: domain Description: GIIM Note: maturase Location: 231 8434-231 8632 bp Feature: gene Location: 2319469-2319708 bp Feature: domain Description: PHA02517 Location: 2319472-2319643 bp Feature: domain Description: PHA0251 7 Location: 231 9472-231 9643 bp Feature: gene Location: 2319970-2321121 bp Feature: domain Description: HTH_38 Location: 2319979-2320093 bp Feature: domain Description: HTH_38 Location: 231 9979-2320093 bp Feature: domain Description: Tra8 Location: 2320129-2321110 bp Feature: domain Description: Tra8 Location: 23201 29-2321 1 1 0 bp Feature: gene Location: 2927036-2927755 bp Feature: domain Description: HNH Note: nucleases Location: 2927123-2927249 bp Feature: domain Description: HNH Note: nucleases Location: 29271 23-2927249 bp Feature: gene Location: 2928031-2928954 bp Feature: gene Location: 2929117-2930079 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2929294-2929837 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2929294-2929837 bp Feature: gene Location: 2930097-2931122 bp Feature: domain Description: Q Location: 2930103-2931120 bp Feature: domain Description: Q Location: 29301 03-2931 1 20 bp Feature: gene Location: 2931122-2932888 bp Feature: domain Description: P Location: 2931149-2932883 bp Feature: domain Description: P Location: 2931 1 49-2932883 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), IS285 (COG3328), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), HTH_38 (pfam13936), Tra8 (COG2826), HNH (pfam01844), RVT-Retrons, Q (PHA02536)
P (PHA02535)

Seq: KB732240.1 Escherichia coli KTE10 genomic scaffold acEvd-supercont1.4, whole genome shotgun sequence (1261126 bp)
Overview 1 RT 1: 483276-487422 bp 2 RT 2: 1254390-1260702 bp Neighborhood of RT #1 [483276, 487850] HTH_XRE RVT-Retrons PRK13889 CoiA Neighborhood of RT #2 [1254390, 1260713] HsdM PHA02517 RVT-GII GIIM PHA02517 Tra8 Feature: gene Location: 483276-483491 bp Feature: gene Location: 483582-483863 bp Feature: domain Description: HTH_XRE Location: 483597-483762 bp Feature: domain Description: HTH_XRE Location: 483597-483762 bp Feature: gene Location: 483856-484956 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 483997-484549 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 483997-484549 bp Feature: gene Location: 485033-486535 bp Feature: domain Description: PRK13889 Location: 485036-485618 bp Feature: domain Description: PRK13889 Location: 485036-485618 bp Feature: gene Location: 487203-487850 bp Feature: domain Description: CoiA Location: 487284-487422 bp Feature: domain Description: CoiA Location: 4872 84-48742 2 bp Feature: gene Location: 1254390-1256099 bp Feature: domain Description: HsdM Location: 1254411-1256082 bp Feature: domain Description: HsdM Location: 12 54411-12 56082 bp Feature: gene Location: 1256734-1257126 bp Feature: domain Description: PHA02517 Location: 1256740-1257118 bp Feature: domain Description: PHA02 517 Location: 12 56740-12 57118 bp Feature: gene Location: 1257291-1258814 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1257564-1258296 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 57564-12 582 96 bp Feature: domain Description: GIIM Note: maturase Location: 1258371-1258569 bp Feature: domain Description: GIIM Note: maturase Location: 12 58371-12 58569 bp Feature: gene Location: 1259406-1259645 bp Feature: domain Description: PHA02517 Location: 1259409-1259580 bp Feature: domain Description: PHA02 517 Location: 12 59409-12 59580 bp Feature: gene Location: 1259907-1260713 bp Feature: domain Description: Tra8 Location: 1259913-1260702 bp Feature: domain Description: Tra8 Location: 12 59913-12 60702 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, PRK13889 (conjugal transfer relaxase TraA; Provisional), CoiA (pfam06054), HsdM (COG0286), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), Tra8 (COG2826)