myRT

myRT report for GCA_000351325.1_Esch_coli_KTE233_V1

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Seq: KB732580.1 Escherichia coli KTE233 genomic scaffold acEoc-supercont1.1, whole genome shotgun sequence (4886089 bp)
Overview 1 RT 1: 85850-92813 bp 2 RT 2: 778752-782243 bp 3 RT 3: 1062189-1068011 bp 4 RT 4: 2540748-2546770 bp Neighborhood of RT #1 [85850, 93034] FI AAA_15 RVT-Retrons Caudo_TAP COG5301 Neighborhood of RT #2 [778752, 782243] YgbA_NO RVT-Retrons Neighborhood of RT #3 [1062189, 1068154] COG3547 RVT-GII GIIM PHA02517 HNH_2 Neighborhood of RT #4 [2540748, 2546805] LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 PHA02517 RVT-GII GIIM HTH_38 Tra8 PHA02517 Feature: gene Location: 85850-87040 bp Feature: domain Description: FI Location: 85853-87029 bp Feature: domain Description: FI Location: 85853-87029 bp Feature: gene Location: 87540-89804 bp Feature: domain Description: AAA_15 Location: 87543-88566 bp Feature: domain Description: AAA_1 5 Location: 87543-88566 bp Feature: gene Location: 89925-91022 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 90093-90639 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 90093-90639 bp Feature: gene Location: 91445-91972 bp Feature: domain Description: Caudo_TAP Location: 91565-91970 bp Feature: domain Description: Caudo_TAP Location: 91 565-91 970 bp Feature: gene Location: 91976-93034 bp Feature: domain Description: COG5301 Location: 92387-92813 bp Feature: domain Description: COG5301 Location: 92387-9281 3 bp Feature: gene Location: 778752-779105 bp Feature: domain Description: YgbA_NO Location: 778764-779070 bp Feature: domain Description: YgbA_NO Location: 778764-779070 bp Feature: gene Location: 779162-779395 bp Feature: gene Location: 779828-781009 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 779978-780554 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 779978-780554 bp Feature: gene Location: 780999-781661 bp Feature: gene Location: 781860-782243 bp Feature: gene Location: 1062189-1062533 bp Feature: gene Location: 1063023-1064099 bp Feature: domain Description: COG3547 Location: 1063062-1063983 bp Feature: domain Description: COG3547 Location: 1 063062-1 063983 bp Feature: gene Location: 1064641-1066164 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1064914-1065646 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 06491 4-1 065646 bp Feature: domain Description: GIIM Note: maturase Location: 1065721-1065919 bp Feature: domain Description: GIIM Note: maturase Location: 1 065721 -1 06591 9 bp Feature: gene Location: 1066756-1067235 bp Feature: domain Description: PHA02517 Location: 1066822-1067173 bp Feature: domain Description: PHA0251 7 Location: 1 066822-1 0671 73 bp Feature: gene Location: 1067645-1068154 bp Feature: domain Description: HNH_2 Location: 1067855-1068011 bp Feature: domain Description: HNH_2 Location: 1 067855-1 06801 1 bp Feature: gene Location: 2540748-2541752 bp Feature: domain Description: LZ_Tnp_IS66 Location: 2540886-2541111 bp Feature: domain Description: LZ_Tnp_IS66 Location: 2540886-2541 1 1 1 bp Feature: domain Description: zf-IS66 Location: 2541132-2541264 bp Feature: domain Description: zf-IS66 Location: 2541 1 32-2541 264 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2541309-2541732 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2541 309-2541 732 bp Feature: gene Location: 2541745-2542185 bp Feature: domain Description: PHA02517 Location: 2541748-2542156 bp Feature: domain Description: PHA0251 7 Location: 2541 748-25421 56 bp Feature: gene Location: 2542314-2543837 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2542587-2543319 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2542587-254331 9 bp Feature: domain Description: GIIM Note: maturase Location: 2543394-2543592 bp Feature: domain Description: GIIM Note: maturase Location: 2543394-2543592 bp Feature: gene Location: 2544985-2546136 bp Feature: domain Description: HTH_38 Location: 2544994-2545108 bp Feature: domain Description: HTH_38 Location: 2544994-25451 08 bp Feature: domain Description: Tra8 Location: 2545144-2546125 bp Feature: domain Description: Tra8 Location: 25451 44-25461 25 bp Feature: gene Location: 2546398-2546805 bp Feature: domain Description: PHA02517 Location: 2546401-2546770 bp Feature: domain Description: PHA0251 7 Location: 2546401 -2546770 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FI (PHA02560), AAA_15 (pfam13175), RVT-Retrons, Caudo_TAP (pfam02413), COG5301 (Phage-related tail fibre protein ), YgbA_NO (pfam11756), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)
HNH_2 (pfam13391), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), HTH_38 (pfam13936), Tra8 (COG2826)