myRT

myRT report for GCA_000352705.1_Esch_coli_KTE147_V1

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Seq: KB733135.1 Escherichia coli KTE147 genomic scaffold acATe-supercont1.3, whole genome shotgun sequence (4827518 bp)
Overview 1 RT 1: 3584040-3588888 bp Neighborhood of RT #1 [3584040, 3588896] RVT-Retrons HTH_1 PBP2_CrgA_like_5 Feature: gene Location: 3584040-3584261 bp Feature: gene Location: 3584462-3585430 bp Feature: gene Location: 3585417-3586349 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3585519-3586110 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 358551 9-35861 1 0 bp Feature: gene Location: 3586344-3586826 bp Feature: gene Location: 3588012-3588896 bp Feature: domain Description: HTH_1 Location: 3588036-3588210 bp Feature: domain Description: HTH_1 Location: 3588036-358821 0 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 3588291-3588888 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 3588291 -3588888 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, HTH_1 (pfam00126), PBP2_CrgA_like_5 (cd08474)

Seq: KB733133.1 Escherichia coli KTE147 genomic scaffold acATe-supercont1.1, whole genome shotgun sequence (185326 bp)
Overview 1 RT 1: 78599-83029 bp 2 RT 2: 112450-115923 bp Neighborhood of RT #1 [78599, 83166] Plasmid_stab_B RVT_N RVT-GII GIIM HNHc DUF1281 Tra5 Neighborhood of RT #2 [112450, 115928] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 78599-78991 bp Feature: domain Description: Plasmid_stab_B Location: 78623-78833 bp Feature: domain Description: Plasmid_stab_B Location: 7862 3-78833 bp Feature: gene Location: 79075-79254 bp Feature: gene Location: 80277-82001 bp Feature: RT Description: RVT_N Location: 80334-80571 bp Feature: RT Description: RVT_N Location: 80334-80571 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80622-81270 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8062 2 -812 70 bp Feature: domain Description: GIIM Note: maturase Location: 81324-81555 bp Feature: domain Description: GIIM Note: maturase Location: 8132 4-81555 bp Feature: domain Description: HNHc Note: nucleases Location: 81786-81945 bp Feature: domain Description: HNHc Note: nucleases Location: 81786-81945 bp Feature: gene Location: 82078-82527 bp Feature: domain Description: DUF1281 Location: 82147-82501 bp Feature: domain Description: DUF12 81 Location: 82 147-82 501 bp Feature: gene Location: 82576-83166 bp Feature: domain Description: Tra5 Location: 82597-83029 bp Feature: domain Description: Tra5 Location: 82 597-8302 9 bp Feature: gene Location: 112450-112545 bp Feature: gene Location: 113101-115002 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113368-114199 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113368-114199 bp Feature: domain Description: Intron_maturas2 Location: 114313-114571 bp Feature: domain Description: Intron_maturas2 Location: 114313-114571 bp Feature: domain Description: HNHc Note: nucleases Location: 114745-114907 bp Feature: domain Description: HNHc Note: nucleases Location: 114745-114907 bp Feature: gene Location: 115197-115637 bp Feature: domain Description: PRK13732 Location: 115200-115635 bp Feature: domain Description: PRK13732 Location: 1152 00-115635 bp Feature: gene Location: 115695-115928 bp Feature: domain Description: DUF905 Location: 115725-115923 bp Feature: domain Description: DUF905 Location: 11572 5-11592 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Plasmid_stab_B (pfam10784), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1281 (pfam06924), Tra5 (COG2801), Intron_maturas2 (pfam01348), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)