myRT

myRT report for GCA_000352805.1_Esch_coli_KTE194_V1

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Seq: KB733149.1 Escherichia coli KTE194 genomic scaffold acASC-supercont1.1, whole genome shotgun sequence (1558233 bp)
Overview 1 RT 1: 16025-25345 bp 2 RT 2: 43603-49501 bp Neighborhood of RT #1 [16025, 25353] YcaC_related RVT-GII GIIM RVT-GII DDE_Tnp_IS66 DDE_Tnp_IS66 TnpB_IS66 HTH_23 InsE RVT-GII RVT-GII FHA_bHelix fil_hemag_20aa FHA_bHelix FHA_bHelix PRK09413 Neighborhood of RT #2 [43603, 49501] YcaC_related RVT-GII GIIM InsG Transposase_20 Feature: gene Location: 16025-16135 bp Feature: gene Location: 16108-16413 bp Ori: ELH20180.1 Feature: domain Description: YcaC_related Location: 16126-16408 bp Feature: domain Description: YcaC_related Location: 1 61 26-1 6408 bp Feature: gene Location: 16703-17230 bp Ori: ELH20181.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16709-16853 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 6709-1 6853 bp Feature: domain Description: GIIM Note: maturase Location: 16931-17153 bp Feature: domain Description: GIIM Note: maturase Location: 1 6931 -1 71 53 bp Feature: gene Location: 17223-17933 bp Ori: ELH20182.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17424-17925 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 7424-1 7925 bp Feature: gene Location: 18385-18633 bp Ori: ELH20183.1 Feature: domain Description: DDE_Tnp_IS66 Location: 18388-18592 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 8388-1 8592 bp Feature: gene Location: 18617-18802 bp Ori: ELH20184.1 Feature: domain Description: DDE_Tnp_IS66 Location: 18620-18782 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 8620-1 8782 bp Feature: gene Location: 19846-20193 bp Ori: ELH20186.1 Feature: domain Description: TnpB_IS66 Location: 19873-20164 bp Feature: domain Description: TnpB_IS66 Location: 1 9873-201 64 bp Feature: gene Location: 20193-20843 bp Ori: ELH20187.1 Feature: domain Description: HTH_23 Location: 20244-20343 bp Feature: domain Description: HTH_23 Location: 20244-20343 bp Feature: domain Description: InsE Location: 20469-20820 bp Feature: domain Description: InsE Location: 20469-20820 bp Feature: gene Location: 21825-22199 bp Ori: ELH20188.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21831-22002 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 831 -22002 bp Feature: gene Location: 22215-23027 bp Ori: ELH20189.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22488-22944 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22488-22944 bp Feature: gene Location: 23638-24843 bp Ori: ELH20190.1 Feature: domain Description: FHA_bHelix Location: 23656-23890 bp Feature: domain Description: FHA_bHelix Location: 23656-23890 bp Feature: domain Description: fil_hemag_20aa Location: 23890-24010 bp Feature: domain Description: fil_hemag_20aa Location: 23890-2401 0 bp Feature: domain Description: FHA_bHelix Location: 24121-24484 bp Feature: domain Description: FHA_bHelix Location: 241 21 -24484 bp Feature: domain Description: FHA_bHelix Location: 24706-24814 bp Feature: domain Description: FHA_bHelix Location: 24706-2481 4 bp Feature: gene Location: 25180-25353 bp Ori: ELH20191.1 Feature: domain Description: PRK09413 Location: 25183-25345 bp Feature: domain Description: PRK0941 3 Location: 251 83-25345 bp Feature: gene Location: 43603-44283 bp Ori: ELH20208.1 Feature: domain Description: YcaC_related Location: 43648-44125 bp Feature: domain Description: YcaC_related Location: 43648-441 25 bp Feature: gene Location: 44620-45231 bp Feature: gene Location: 46159-47547 bp Ori: ELH20210.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46489-47107 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46489-471 07 bp Feature: domain Description: GIIM Note: maturase Location: 47155-47386 bp Feature: domain Description: GIIM Note: maturase Location: 471 55-47386 bp Feature: gene Location: 47934-49325 bp Ori: ELH20211.1 Feature: domain Description: InsG Location: 47937-48858 bp Feature: domain Description: InsG Location: 47937-48858 bp Feature: domain Description: Transposase_20 Location: 48981-49227 bp Feature: domain Description: Transposase_20 Location: 48981 -49227 bp Feature: gene Location: 49322-49501 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YcaC_related (cd01012), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050), TnpB_IS66 (pfam05717), HTH_23 (pfam13384), InsE (COG2963), FHA_bHelix (sd00046), fil_hemag_20aa (TIGR01731), PRK09413 (IS2 repressor TnpA; Reviewed)
InsG (COG3385), Transposase_20 (pfam02371)

Seq: KB733155.1 Escherichia coli KTE194 genomic scaffold acASC-supercont1.7, whole genome shotgun sequence (23379 bp)
Overview 1 RT 1: 5524-9905 bp Neighborhood of RT #1 [5524, 9905] COG3547 COG3547 RVT-GII fecB Feature: gene Location: 5524-6165 bp Ori: ELH06995.1 Feature: domain Description: COG3547 Location: 5533-6115 bp Feature: domain Description: COG3547 Location: 5533-6115 bp Feature: gene Location: 6131-6526 bp Ori: ELH06996.1 Feature: domain Description: COG3547 Location: 6149-6440 bp Feature: domain Description: COG3547 Location: 6149-6440 bp Feature: gene Location: 6765-8099 bp Ori: ELH06997.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7050-7737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7050-7737 bp Feature: gene Location: 9047-9487 bp Ori: ELH06998.1 Feature: domain Description: fecB Location: 9050-9476 bp Feature: domain Description: fecB Location: 9050-9476 bp Feature: gene Location: 9606-9905 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, fecB (PRK11411)