myRT

myRT report for GCA_000352845.1_Esch_coli_KTE173_V1

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Seq: KB733442.1 Escherichia coli KTE173 genomic scaffold acASm-supercont1.4, whole genome shotgun sequence (420320 bp)
Overview 1 RT 1: 7423-11406 bp Neighborhood of RT #1 [7423, 11417] HTH_38 Tra8 PHA02517 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 7423-8124 bp Ori: ELH18445.1 Feature: domain Description: HTH_38 Location: 7432-7546 bp Feature: domain Description: HTH_38 Location: 7432-7546 bp Feature: domain Description: Tra8 Location: 7582-7978 bp Feature: domain Description: Tra8 Location: 7582-7978 bp Feature: gene Location: 8000-8353 bp Ori: ELH18446.1 Feature: domain Description: PHA02517 Location: 8003-8348 bp Feature: domain Description: PHA0251 7 Location: 8003-8348 bp Feature: gene Location: 8548-10071 bp Ori: ELH18447.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8821-9553 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8821 -9553 bp Feature: domain Description: GIIM Note: maturase Location: 9628-9826 bp Feature: domain Description: GIIM Note: maturase Location: 9628-9826 bp Feature: gene Location: 10663-10902 bp Ori: ELH18448.1 Feature: domain Description: PHA02517 Location: 10666-10837 bp Feature: domain Description: PHA0251 7 Location: 1 0666-1 0837 bp Feature: gene Location: 11115-11417 bp Ori: ELH18449.1 Feature: domain Description: InsE Location: 11124-11406 bp Feature: domain Description: InsE Location: 1 1 1 24-1 1 406 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_38 (pfam13936), Tra8 (COG2826), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963)

Seq: KB733439.1 Escherichia coli KTE173 genomic scaffold acASm-supercont1.1, whole genome shotgun sequence (3739172 bp)
Overview 1 RT 1: 1824157-1830499 bp 2 RT 2: 3061734-3067299 bp 3 RT 3: 3720189-3724455 bp Neighborhood of RT #1 [1824157, 1830499] PRK11388 RVT-Retrons Neighborhood of RT #2 [3061734, 3067301] GerD RVT-UG1 YeeP Neighborhood of RT #3 [3720189, 3724457] FaeA PHA02517 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 1824157-1826076 bp Ori: ELH26554.1 Feature: domain Description: PRK11388 Location: 1824160-1826068 bp Feature: domain Description: PRK11388 Location: 182 4160-182 6068 bp Feature: gene Location: 1826558-1826797 bp Feature: gene Location: 1827368-1829125 bp Ori: ELH26556.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1827512-1828130 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 182 7512 -182 8130 bp Feature: gene Location: 1829147-1829314 bp Feature: gene Location: 1829372-1830499 bp Feature: gene Location: 3061734-3062168 bp Ori: ELH23828.1 Feature: domain Description: GerD Location: 3061812-3061926 bp Feature: domain Description: GerD Location: 3061812 -306192 6 bp Feature: gene Location: 3062177-3063160 bp Feature: gene Location: 3063394-3065865 bp Ori: ELH23830.1 Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 3064006-3064516 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 3064006-3064516 bp Feature: gene Location: 3066469-3066596 bp Feature: gene Location: 3067077-3067301 bp Ori: ELH23739.1 Feature: domain Description: YeeP Location: 3067080-3067299 bp Feature: domain Description: YeeP Location: 3067080-30672 99 bp Feature: gene Location: 3720189-3720410 bp Ori: ELH20596.1 Feature: domain Description: FaeA Location: 3720192-3720369 bp Feature: domain Description: FaeA Location: 372 0192 -372 0369 bp Feature: gene Location: 3721061-3721420 bp Ori: ELH20597.1 Feature: domain Description: PHA02517 Location: 3721064-3721418 bp Feature: domain Description: PHA02 517 Location: 372 1064-372 1418 bp Feature: gene Location: 3721537-3723060 bp Ori: ELH20598.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3721810-3722542 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 372 1810-372 2 542 bp Feature: domain Description: GIIM Note: maturase Location: 3722617-3722815 bp Feature: domain Description: GIIM Note: maturase Location: 372 2 617-372 2 815 bp Feature: gene Location: 3723652-3724131 bp Ori: ELH20599.1 Feature: domain Description: PHA02517 Location: 3723715-3724066 bp Feature: domain Description: PHA02 517 Location: 372 3715-372 4066 bp Feature: gene Location: 3724131-3724457 bp Ori: ELH20600.1 Feature: domain Description: InsE Location: 3724134-3724455 bp Feature: domain Description: InsE Location: 372 4134-372 4455 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK11388 (DNA-binding transcriptional regulator DhaR; Provisional), RVT-Retrons, GerD (pfam17898), RVT-UG1, YeeP (COG3596), FaeA (pfam04703), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963)