myRT

myRT report for GCA_000352865.1_Esch_coli_KTE175_V1

Download annotations/find similar RTs

Seq: KB733161.1 Escherichia coli KTE175 genomic scaffold acASt-supercont1.4, whole genome shotgun sequence (1105104 bp)
Overview 1 RT 1: 15532-23963 bp 2 RT 2: 673028-677294 bp 3 RT 3: 697438-701421 bp Neighborhood of RT #1 [15532, 24358] GerD RVT-UG1 YeeP AidA AidA Neighborhood of RT #2 [673028, 677296] FaeA PHA02517 RVT-GII GIIM PHA02517 InsE Neighborhood of RT #3 [697438, 701432] HTH_38 Tra8 PHA02517 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 15532-15966 bp Ori: ELH23995.1 Feature: domain Description: GerD Location: 15610-15724 bp Feature: domain Description: GerD Location: 1 561 0-1 5724 bp Feature: gene Location: 15975-16958 bp Feature: gene Location: 17192-19663 bp Ori: ELH23997.1 Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 17804-18314 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 1 7804-1 831 4 bp Feature: gene Location: 20267-21139 bp Ori: ELH23998.1 Feature: domain Description: YeeP Location: 20270-21137 bp Feature: domain Description: YeeP Location: 20270-21 1 37 bp Feature: gene Location: 21512-24358 bp Ori: ELH23999.1 Feature: domain Description: AidA Location: 21551-23513 bp Feature: domain Description: AidA Location: 21 551 -2351 3 bp Feature: domain Description: AidA Location: 23552-23963 bp Feature: domain Description: AidA Location: 23552-23963 bp Feature: gene Location: 673028-673249 bp Ori: ELH22918.1 Feature: domain Description: FaeA Location: 673031-673208 bp Feature: domain Description: FaeA Location: 673031 -673208 bp Feature: gene Location: 673900-674259 bp Ori: ELH22919.1 Feature: domain Description: PHA02517 Location: 673903-674257 bp Feature: domain Description: PHA0251 7 Location: 673903-674257 bp Feature: gene Location: 674376-675899 bp Ori: ELH22920.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 674649-675381 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 674649-675381 bp Feature: domain Description: GIIM Note: maturase Location: 675456-675654 bp Feature: domain Description: GIIM Note: maturase Location: 675456-675654 bp Feature: gene Location: 676491-676970 bp Ori: ELH22921.1 Feature: domain Description: PHA02517 Location: 676554-676905 bp Feature: domain Description: PHA0251 7 Location: 676554-676905 bp Feature: gene Location: 676970-677296 bp Ori: ELH22922.1 Feature: domain Description: InsE Location: 676973-677294 bp Feature: domain Description: InsE Location: 676973-677294 bp Feature: gene Location: 697438-698139 bp Ori: ELH22938.1 Feature: domain Description: HTH_38 Location: 697447-697561 bp Feature: domain Description: HTH_38 Location: 697447-697561 bp Feature: domain Description: Tra8 Location: 697597-697993 bp Feature: domain Description: Tra8 Location: 697597-697993 bp Feature: gene Location: 698015-698368 bp Ori: ELH22939.1 Feature: domain Description: PHA02517 Location: 698018-698363 bp Feature: domain Description: PHA0251 7 Location: 69801 8-698363 bp Feature: gene Location: 698563-700086 bp Ori: ELH22940.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 698836-699568 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 698836-699568 bp Feature: domain Description: GIIM Note: maturase Location: 699643-699841 bp Feature: domain Description: GIIM Note: maturase Location: 699643-699841 bp Feature: gene Location: 700678-700917 bp Ori: ELH22941.1 Feature: domain Description: PHA02517 Location: 700681-700852 bp Feature: domain Description: PHA0251 7 Location: 700681 -700852 bp Feature: gene Location: 701130-701432 bp Ori: ELH22942.1 Feature: domain Description: InsE Location: 701139-701421 bp Feature: domain Description: InsE Location: 701 1 39-701 421 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GerD (pfam17898), RVT-UG1, YeeP (COG3596), AidA (COG3468), FaeA (pfam04703), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963), HTH_38 (pfam13936)
Tra8 (COG2826)

Seq: KB733160.1 Escherichia coli KTE175 genomic scaffold acASt-supercont1.3, whole genome shotgun sequence (1347545 bp)
Overview 1 RT 1: 122874-129216 bp Neighborhood of RT #1 [122874, 129216] PRK11388 RVT-Retrons Feature: gene Location: 122874-124793 bp Ori: ELH27652.1 Feature: domain Description: PRK11388 Location: 122877-124785 bp Feature: domain Description: PRK11388 Location: 12 2 877-12 4785 bp Feature: gene Location: 125275-125514 bp Feature: gene Location: 126085-127842 bp Ori: ELH27654.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 126229-126847 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12 62 2 9-12 6847 bp Feature: gene Location: 127864-128031 bp Feature: gene Location: 128089-129216 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK11388 (DNA-binding transcriptional regulator DhaR; Provisional), RVT-Retrons