myRT

myRT report for GCA_000354315.2_ASM35431v2

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Seq: AQCZ01000083.1 Escherichia coli BCE019_MS-13 gecBCE019MS13.contig.82, whole genome shotgun sequence (674 bp)
Overview 1 RT 1: 1-577 bp Neighborhood of RT #1 [1, 579] RVT-GII Feature: gene Location: 1-579 bp Ori: EMV39226.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 259-577 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 259-577 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: AQCZ01000100.1 Escherichia coli BCE019_MS-13 gecBCE019MS13.contig.99, whole genome shotgun sequence (45922 bp)
Overview 1 RT 1: 493-4080 bp Neighborhood of RT #1 [493, 4082] RVT_N RVT-GII GIIM HNHc gntK PRK14987 Feature: gene Location: 493-2160 bp Ori: EMV37035.1 Feature: domain Description: RVT_N Location: 541-778 bp Feature: domain Description: RVT_N Location: 541-778 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 829-1471 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82 9-1471 bp Feature: domain Description: GIIM Note: maturase Location: 1522-1756 bp Feature: domain Description: GIIM Note: maturase Location: 152 2 -1756 bp Feature: domain Description: HNHc Note: nucleases Location: 1966-2125 bp Feature: domain Description: HNHc Note: nucleases Location: 1966-2 12 5 bp Feature: gene Location: 2421-2909 bp Ori: EMV37036.1 Gene: gntK Feature: domain Description: gntK Location: 2424-2904 bp Feature: domain Description: gntK Location: 2 42 4-2 904 bp Feature: gene Location: 3087-4082 bp Ori: EMV37037.1 Gene: gntR Feature: domain Description: PRK14987 Location: 3090-4080 bp Feature: domain Description: PRK14987 Location: 3090-4080 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), gntK (PRK11545), PRK14987 (HTH-type transcriptional regulator GntR)

Seq: AQCZ01000134.1 Escherichia coli BCE019_MS-13 gecBCE019MS13.contig.133, whole genome shotgun sequence (8317 bp)
Overview 1 RT 1: 40-2764 bp Neighborhood of RT #1 [40, 2769] DDE_Tnp_IS1 RVT-UG17 PRK10597 Feature: gene Location: 40-333 bp Ori: EMV32364.1 Feature: domain Description: DDE_Tnp_IS1 Location: 43-331 bp Feature: domain Description: DDE_Tnp_IS1 Location: 43 -3 3 1 bp Feature: gene Location: 399-1769 bp Ori: EMV32365.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 627-1233 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 627-123 3 bp Feature: gene Location: 2257-2373 bp Feature: gene Location: 2521-2769 bp Ori: EMV32367.1 Feature: domain Description: PRK10597 Location: 2524-2764 bp Feature: domain Description: PRK10597 Location: 2524-2764 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS1 (pfam03400), RVT-UG17, PRK10597 (DNA damage-inducible protein I; Provisional)

Seq: AQCZ01000119.1 Escherichia coli BCE019_MS-13 gecBCE019MS13.contig.118, whole genome shotgun sequence (80113 bp)
Overview 1 RT 1: 76619-80091 bp Neighborhood of RT #1 [76619, 80102] PRK09692 RVT-UG5 Zn_Tnp_IS1 HTH_Tnp_IS1 Feature: gene Location: 76619-77875 bp Ori: EMV34052.1 Feature: domain Description: PRK09692 Location: 76628-77831 bp Feature: domain Description: PRK09692 Location: 76628-77831 bp Feature: gene Location: 77968-78120 bp Feature: gene Location: 78107-79798 bp Ori: EMV34054.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 78443-78971 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 784 4 3-78971 bp Feature: gene Location: 79878-80102 bp Ori: EMV34055.1 Feature: domain Description: Zn_Tnp_IS1 Location: 79881-79935 bp Feature: domain Description: Zn_Tnp_IS1 Location: 79881-79935 bp Feature: domain Description: HTH_Tnp_IS1 Location: 79956-80091 bp Feature: domain Description: HTH_Tnp_IS1 Location: 79956-80091 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), RVT-UG5, Zn_Tnp_IS1 (pfam03811), HTH_Tnp_IS1 (pfam12759)