myRT

myRT report for GCA_000354355.2_ASM35435v2

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Seq: AQCX01000175.1 Escherichia coli C-34666 gecC34666.contig.175, whole genome shotgun sequence (116546 bp)
Overview 1 RT 1: 49655-53538 bp Neighborhood of RT #1 [49655, 53543] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 49655-50113 bp Ori: EMV16237.1 Gene: dut Feature: domain Description: dut Location: 49661-50108 bp Feature: domain Description: dut Location: 49661 -501 08 bp Feature: gene Location: 50220-50816 bp Ori: EMV16221.1 Gene: slmA Feature: domain Description: slmA Location: 50226-50802 bp Feature: domain Description: slmA Location: 50226-50802 bp Feature: gene Location: 50862-51821 bp Ori: EMV16158.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 50997-51546 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 50997-51 546 bp Feature: gene Location: 52119-52760 bp Ori: EMV16161.1 Gene: pyrE Feature: domain Description: pyrE Location: 52122-52755 bp Feature: domain Description: pyrE Location: 521 22-52755 bp Feature: gene Location: 52827-53543 bp Ori: EMV16188.1 Gene: rph Feature: domain Description: rph Location: 52830-53538 bp Feature: domain Description: rph Location: 52830-53538 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: AQCX01000184.1 Escherichia coli C-34666 gecC34666.contig.184, whole genome shotgun sequence (24752 bp)
Overview 1 RT 1: 5621-9464 bp Neighborhood of RT #1 [5621, 9550] RVT-UG17 PRK10597 INT_Rci_Hp1_C Feature: gene Location: 5621-5764 bp Feature: gene Location: 5780-5914 bp Feature: gene Location: 6022-7392 bp Ori: EMV15384.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 6250-6856 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 62 50-6856 bp Feature: gene Location: 8144-8392 bp Ori: EMV15393.1 Feature: domain Description: PRK10597 Location: 8147-8387 bp Feature: domain Description: PRK10597 Location: 8147-8387 bp Feature: gene Location: 8453-9550 bp Ori: EMV15379.1 Feature: domain Description: INT_Rci_Hp1_C Location: 8993-9464 bp Feature: domain Description: INT_Rci_Hp1_C Location: 8993-9464 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG17, PRK10597 (DNA damage-inducible protein I; Provisional), INT_Rci_Hp1_C (cd00796)

Seq: AQCX01000143.1 Escherichia coli C-34666 gecC34666.contig.143, whole genome shotgun sequence (11184 bp)
Overview 1 RT 1: 1334-5880 bp 2 RT 2: 8454-10555 bp Neighborhood of RT #1 [1334, 5880] TnpB_IS66 HTH_23 InsE RVT_N RVT-GII GIIM HNHc PRK13699 Neighborhood of RT #2 [8454, 10590] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 1334-1681 bp Ori: EMV20757.1 Feature: domain Description: TnpB_IS66 Location: 1361-1652 bp Feature: domain Description: TnpB_IS66 Location: 13 61-1652 bp Feature: gene Location: 1681-2328 bp Ori: EMV20764.1 Feature: domain Description: HTH_23 Location: 1711-1822 bp Feature: domain Description: HTH_23 Location: 1711-1822 bp Feature: domain Description: InsE Location: 1954-2308 bp Feature: domain Description: InsE Location: 1954-23 08 bp Feature: gene Location: 2724-4382 bp Ori: EMV20763.1 Feature: domain Description: RVT_N Location: 2736-2979 bp Feature: domain Description: RVT_N Location: 273 6-2979 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3024-3660 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 024-3 660 bp Feature: domain Description: GIIM Note: maturase Location: 3711-3945 bp Feature: domain Description: GIIM Note: maturase Location: 3 711-3 945 bp Feature: domain Description: HNHc Note: nucleases Location: 4176-4326 bp Feature: domain Description: HNHc Note: nucleases Location: 4176-43 26 bp Feature: gene Location: 5146-5658 bp Ori: EMV20762.1 Feature: domain Description: PRK13699 Location: 5149-5656 bp Feature: domain Description: PRK13 699 Location: 5149-5656 bp Feature: gene Location: 5659-5880 bp Feature: gene Location: 8454-8645 bp Feature: gene Location: 8716-8850 bp Feature: gene Location: 8923-10590 bp Ori: EMV20755.1 Feature: domain Description: RVT_N Location: 8971-9208 bp Feature: domain Description: RVT_N Location: 8971-9208 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9259-9901 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9259-9901 bp Feature: domain Description: GIIM Note: maturase Location: 9952-10186 bp Feature: domain Description: GIIM Note: maturase Location: 9952-10186 bp Feature: domain Description: HNHc Note: nucleases Location: 10396-10555 bp Feature: domain Description: HNHc Note: nucleases Location: 103 96-10555 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), HTH_23 (pfam13384), InsE (COG2963), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK13699 (putative methylase; Provisional)

Seq: AQCX01000094.1 Escherichia coli C-34666 gecC34666.contig.94, whole genome shotgun sequence (2673 bp)
Overview 1 RT 1: 51-1890 bp Neighborhood of RT #1 [51, 1925] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 51-185 bp Feature: gene Location: 258-1925 bp Ori: EMV26057.1 Feature: domain Description: RVT_N Location: 306-543 bp Feature: domain Description: RVT_N Location: 306-54 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 594-1236 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 594 -1236 bp Feature: domain Description: GIIM Note: maturase Location: 1287-1521 bp Feature: domain Description: GIIM Note: maturase Location: 1287-1521 bp Feature: domain Description: HNHc Note: nucleases Location: 1731-1890 bp Feature: domain Description: HNHc Note: nucleases Location: 1731-1890 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)