myRT

myRT report for GCA_000354595.1_ASM35459v1

Download annotations/find similar RTs

Seq: AQCM01000056.1 Escherichia coli MP021552.12 gecMP02155212.contig.55, whole genome shotgun sequence (278294 bp)
Overview 1 RT 1: 43-3998 bp Neighborhood of RT #1 [43, 4030] RVT-GII GIIM D HEPN_RiboL-PSP Feature: gene Location: 43-165 bp Feature: gene Location: 183-344 bp Feature: gene Location: 1047-2378 bp Ori: EMU68833.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1332-2019 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 332-201 9 bp Feature: domain Description: GIIM Note: maturase Location: 2136-2304 bp Feature: domain Description: GIIM Note: maturase Location: 21 36-2304 bp Feature: gene Location: 2516-2887 bp Ori: EMU68834.1 Feature: domain Description: D Location: 2546-2861 bp Feature: domain Description: D Location: 2546-2861 bp Feature: gene Location: 3008-4030 bp Ori: EMU68835.1 Feature: domain Description: HEPN_RiboL-PSP Location: 3548-3998 bp Feature: domain Description: HEPN_RiboL-PSP Location: 3548-3998 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), D (PHA02561), HEPN_RiboL-PSP (pfam18735)

Seq: AQCM01000147.1 Escherichia coli MP021552.12 gecMP02155212.contig.147, whole genome shotgun sequence (4980 bp)
Overview 1 RT 1: 3597-4943 bp Neighborhood of RT #1 [3597, 4978] RVT-GII GIIM HNHc Feature: gene Location: 3597-3788 bp Feature: gene Location: 3751-3954 bp Feature: gene Location: 4067-4978 bp Ori: EMU61491.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4094-4289 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4094-42 89 bp Feature: domain Description: GIIM Note: maturase Location: 4340-4574 bp Feature: domain Description: GIIM Note: maturase Location: 4340-4574 bp Feature: domain Description: HNHc Note: nucleases Location: 4784-4943 bp Feature: domain Description: HNHc Note: nucleases Location: 4784-4943 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: AQCM01000092.1 Escherichia coli MP021552.12 gecMP02155212.contig.91, whole genome shotgun sequence (25242 bp)
Overview 1 RT 1: 6155-9998 bp Neighborhood of RT #1 [6155, 10084] RVT-UG17 PRK10597 INT_Rci_Hp1_C Feature: gene Location: 6155-6298 bp Feature: gene Location: 6314-6448 bp Feature: gene Location: 6556-7926 bp Ori: EMU65670.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 6784-7390 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 6784-73 90 bp Feature: gene Location: 8678-8926 bp Ori: EMU65671.1 Feature: domain Description: PRK10597 Location: 8681-8921 bp Feature: domain Description: PRK10597 Location: 8681-8921 bp Feature: gene Location: 8987-10084 bp Ori: EMU65672.1 Feature: domain Description: INT_Rci_Hp1_C Location: 9527-9998 bp Feature: domain Description: INT_Rci_Hp1_C Location: 9527-9998 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG17, PRK10597 (DNA damage-inducible protein I; Provisional), INT_Rci_Hp1_C (cd00796)

Seq: AQCM01000083.1 Escherichia coli MP021552.12 gecMP02155212.contig.82, whole genome shotgun sequence (181971 bp)
Overview 1 RT 1: 47039-50922 bp Neighborhood of RT #1 [47039, 50927] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 47039-47497 bp Ori: EMU66766.1 Gene: dut Feature: domain Description: dut Location: 47045-47492 bp Feature: domain Description: dut Location: 4 704 5-4 74 92 bp Feature: gene Location: 47604-48200 bp Ori: EMU66767.1 Gene: slmA Feature: domain Description: slmA Location: 47610-48186 bp Feature: domain Description: slmA Location: 4 7610-4 8186 bp Feature: gene Location: 48246-49205 bp Ori: EMU66768.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 48381-48930 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4 8381-4 8930 bp Feature: gene Location: 49503-50144 bp Ori: EMU66769.1 Gene: pyrE Feature: domain Description: pyrE Location: 49506-50139 bp Feature: domain Description: pyrE Location: 4 9506-50139 bp Feature: gene Location: 50211-50927 bp Ori: EMU66770.1 Gene: rph Feature: domain Description: rph Location: 50214-50922 bp Feature: domain Description: rph Location: 50214 -50922 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)