myRT

myRT report for GCA_000354615.2_ASM35461v2

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Seq: AQCL01000169.1 Escherichia coli MP021552.7 gecMP0215527.contig.169, whole genome shotgun sequence (127695 bp)
Overview 1 RT 1: 108639-111399 bp Neighborhood of RT #1 [108639, 111404] RVT-UG17 SLATT_5 PRK10597 Feature: gene Location: 108639-108776 bp Feature: gene Location: 108792-108926 bp Feature: gene Location: 109034-110404 bp Ori: EMU63945.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 109262-109868 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 1 09262-1 09868 bp Feature: gene Location: 110382-110681 bp Ori: EMU63946.1 Feature: domain Description: SLATT_5 Location: 110385-110652 bp Feature: domain Description: SLATT_5 Location: 1 1 0385-1 1 0652 bp Feature: gene Location: 111156-111404 bp Ori: EMU63947.1 Feature: domain Description: PRK10597 Location: 111159-111399 bp Feature: domain Description: PRK1 0597 Location: 1 1 1 1 59-1 1 1 399 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG17, SLATT_5 (pfam18160), PRK10597 (DNA damage-inducible protein I; Provisional)

Seq: AQCL01000126.1 Escherichia coli MP021552.7 gecMP0215527.contig.126, whole genome shotgun sequence (1267 bp)
Overview 1 RT 1: 32-1232 bp Neighborhood of RT #1 [32, 1267] RVT-GII GIIM HNHc Feature: gene Location: 32-1267 bp Ori: EMU67341.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35-578 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35-578 bp Feature: domain Description: GIIM Note: maturase Location: 629-863 bp Feature: domain Description: GIIM Note: maturase Location: 62 9-863 bp Feature: domain Description: HNHc Note: nucleases Location: 1073-1232 bp Feature: domain Description: HNHc Note: nucleases Location: 1073-12 32 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: AQCL01000018.1 Escherichia coli MP021552.7 gecMP0215527.contig.17, whole genome shotgun sequence (2182 bp)
Overview 1 RT 1: 130-2174 bp Neighborhood of RT #1 [130, 2174] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 130-1788 bp Ori: EMU72752.1 Feature: domain Description: RVT_N Location: 142-385 bp Feature: domain Description: RVT_N Location: 142-3 85 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 430-1066 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43 0-1066 bp Feature: domain Description: GIIM Note: maturase Location: 1117-1351 bp Feature: domain Description: GIIM Note: maturase Location: 1117-13 51 bp Feature: domain Description: HNHc Note: nucleases Location: 1582-1732 bp Feature: domain Description: HNHc Note: nucleases Location: 1582-173 2 bp Feature: gene Location: 2049-2174 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: AQCL01000234.1 Escherichia coli MP021552.7 gecMP0215527.contig.234, whole genome shotgun sequence (147777 bp)
Overview 1 RT 1: 12642-16525 bp Neighborhood of RT #1 [12642, 16530] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 12642-13100 bp Ori: EMU57734.1 Gene: dut Feature: domain Description: dut Location: 12648-13095 bp Feature: domain Description: dut Location: 1264 8-13095 bp Feature: gene Location: 13207-13803 bp Ori: EMU57735.1 Gene: slmA Feature: domain Description: slmA Location: 13213-13789 bp Feature: domain Description: slmA Location: 13213-13789 bp Feature: gene Location: 13849-14808 bp Ori: EMU57736.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13984-14533 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13984 -14 533 bp Feature: gene Location: 15106-15747 bp Ori: EMU57737.1 Gene: pyrE Feature: domain Description: pyrE Location: 15109-15742 bp Feature: domain Description: pyrE Location: 15109-1574 2 bp Feature: gene Location: 15814-16530 bp Ori: EMU57738.1 Gene: rph Feature: domain Description: rph Location: 15817-16525 bp Feature: domain Description: rph Location: 15817-16525 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)