myRT

myRT report for GCA_000354735.2_ASM35473v2

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Seq: AQEW01000031.1 Escherichia coli MP021552.8 gecMP0215528.contig.30, whole genome shotgun sequence (74934 bp)
Overview 1 RT 1: 34848-38110 bp 2 RT 2: 71092-74934 bp Neighborhood of RT #1 [34848, 38220] RVT-GII GIIM D Ogr_Delta Neighborhood of RT #2 [71092, 74934] DUF1281 DUF1281_C RVT-GII GIIM RVT_N Feature: gene Location: 34848-35195 bp Feature: gene Location: 35213-35374 bp Feature: gene Location: 36077-37408 bp Ori: EMX33366.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36362-37049 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36362-37049 bp Feature: domain Description: GIIM Note: maturase Location: 37166-37334 bp Feature: domain Description: GIIM Note: maturase Location: 371 66-37334 bp Feature: gene Location: 37546-37917 bp Ori: EMX33367.1 Feature: domain Description: D Location: 37576-37891 bp Feature: domain Description: D Location: 37576-37891 bp Feature: gene Location: 37960-38220 bp Ori: EMX33368.1 Feature: domain Description: Ogr_Delta Location: 37969-38110 bp Feature: domain Description: Ogr_Delta Location: 37969-381 1 0 bp Feature: gene Location: 71092-72018 bp Ori: EMX33404.1 Feature: domain Description: DUF1281 Location: 71185-71713 bp Feature: domain Description: DUF1 281 Location: 71 1 85-71 71 3 bp Feature: domain Description: DUF1281_C Location: 71719-71959 bp Feature: domain Description: DUF1 281 _C Location: 71 71 9-71 959 bp Feature: gene Location: 72171-72296 bp Feature: gene Location: 72910-73881 bp Ori: EMX33406.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72913-73504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7291 3-73504 bp Feature: domain Description: GIIM Note: maturase Location: 73555-73789 bp Feature: domain Description: GIIM Note: maturase Location: 73555-73789 bp Feature: gene Location: 73913-74224 bp Ori: EMX33407.1 Feature: domain Description: RVT_N Location: 73925-74147 bp Feature: domain Description: RVT_N Location: 73925-741 47 bp Feature: gene Location: 74736-74934 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), D (PHA02561), Ogr_Delta (pfam04606), DUF1281 (pfam06924), DUF1281_C (pfam18406), RVT_N (pfam13655)

Seq: AQEW01000029.1 Escherichia coli MP021552.8 gecMP0215528.contig.28, whole genome shotgun sequence (277491 bp)
Overview 1 RT 1: 71889-75725 bp Neighborhood of RT #1 [71889, 75811] RVT-UG17 PRK10597 INT_Rci_Hp1_C Feature: gene Location: 71889-72026 bp Feature: gene Location: 72042-72176 bp Feature: gene Location: 72355-73653 bp Ori: EMX34169.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 72583-73189 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 72 583-73189 bp Feature: gene Location: 74405-74653 bp Ori: EMX34170.1 Feature: domain Description: PRK10597 Location: 74408-74648 bp Feature: domain Description: PRK10597 Location: 74408-74648 bp Feature: gene Location: 74714-75811 bp Ori: EMX34171.1 Feature: domain Description: INT_Rci_Hp1_C Location: 75254-75725 bp Feature: domain Description: INT_Rci_Hp1_C Location: 752 54-7572 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG17, PRK10597 (DNA damage-inducible protein I; Provisional), INT_Rci_Hp1_C (cd00796)

Seq: AQEW01000071.1 Escherichia coli MP021552.8 gecMP0215528.contig.70, whole genome shotgun sequence (5308 bp)
Overview 1 RT 1: 1126-4758 bp Neighborhood of RT #1 [1126, 4758] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 1126-1317 bp Feature: gene Location: 1388-1504 bp Feature: gene Location: 1595-3262 bp Ori: EMX27862.1 Feature: domain Description: RVT_N Location: 1643-1880 bp Feature: domain Description: RVT_N Location: 1643 -1880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1931-2573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 193 1-2573 bp Feature: domain Description: GIIM Note: maturase Location: 2624-2858 bp Feature: domain Description: GIIM Note: maturase Location: 2624-2858 bp Feature: domain Description: HNHc Note: nucleases Location: 3068-3227 bp Feature: domain Description: HNHc Note: nucleases Location: 3 068-3 227 bp Feature: gene Location: 3976-4119 bp Feature: gene Location: 4462-4758 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: AQEW01000036.1 Escherichia coli MP021552.8 gecMP0215528.contig.35, whole genome shotgun sequence (37097 bp)
Overview 1 RT 1: 33851-36952 bp Neighborhood of RT #1 [33851, 37008] PRK13699 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 33851-34012 bp Feature: gene Location: 34074-34586 bp Ori: EMX32656.1 Feature: domain Description: PRK13699 Location: 34077-34584 bp Feature: domain Description: PRK13699 Location: 34 077-34 584 bp Feature: gene Location: 35350-37008 bp Ori: EMX32657.1 Feature: domain Description: RVT_N Location: 35362-35605 bp Feature: domain Description: RVT_N Location: 35362-35605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35650-36286 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35650-36286 bp Feature: domain Description: GIIM Note: maturase Location: 36337-36571 bp Feature: domain Description: GIIM Note: maturase Location: 36337-36571 bp Feature: domain Description: HNHc Note: nucleases Location: 36802-36952 bp Feature: domain Description: HNHc Note: nucleases Location: 36802-36952 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13699 (putative methylase; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: AQEW01000016.1 Escherichia coli MP021552.8 gecMP0215528.contig.15, whole genome shotgun sequence (28544 bp)
Overview 1 RT 1: 24423-28544 bp Neighborhood of RT #1 [24423, 28544] DUF1281 DUF1281_C RVT_N RVT-GII GIIM HNHc PRK13699 Feature: gene Location: 24423-24830 bp Ori: EMX37580.1 Feature: domain Description: DUF1281 Location: 24426-24555 bp Feature: domain Description: DUF1281 Location: 24426-245 5 5 bp Feature: domain Description: DUF1281_C Location: 24561-24735 bp Feature: domain Description: DUF1281_C Location: 245 61-24735 bp Feature: gene Location: 25012-25137 bp Feature: gene Location: 25397-27055 bp Ori: EMX37582.1 Feature: domain Description: RVT_N Location: 25409-25652 bp Feature: domain Description: RVT_N Location: 25 409-25 65 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25697-26333 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25 697-26333 bp Feature: domain Description: GIIM Note: maturase Location: 26384-26618 bp Feature: domain Description: GIIM Note: maturase Location: 26384-26618 bp Feature: domain Description: HNHc Note: nucleases Location: 26849-26999 bp Feature: domain Description: HNHc Note: nucleases Location: 26849-26999 bp Feature: gene Location: 27819-28331 bp Ori: EMX37583.1 Feature: domain Description: PRK13699 Location: 27822-28329 bp Feature: domain Description: PRK13699 Location: 27822-28329 bp Feature: gene Location: 28332-28544 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1281 (pfam06924), DUF1281_C (pfam18406), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK13699 (putative methylase; Provisional)

Seq: AQEW01000041.1 Escherichia coli MP021552.8 gecMP0215528.contig.40, whole genome shotgun sequence (8699 bp)
Overview 1 RT 1: 3623-8411 bp Neighborhood of RT #1 [3623, 8411] StbA RVT_N RVT-GII GIIM HNHc PRK13699 Feature: gene Location: 3623-4585 bp Ori: EMX31419.1 Feature: domain Description: StbA Location: 3626-4574 bp Feature: domain Description: StbA Location: 36 26 -4574 bp Feature: gene Location: 4869-4994 bp Feature: gene Location: 5255-6913 bp Ori: EMX31421.1 Feature: domain Description: RVT_N Location: 5267-5510 bp Feature: domain Description: RVT_N Location: 526 7-5510 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5555-6191 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5555-6 191 bp Feature: domain Description: GIIM Note: maturase Location: 6242-6476 bp Feature: domain Description: GIIM Note: maturase Location: 6 242-6 476 bp Feature: domain Description: HNHc Note: nucleases Location: 6707-6857 bp Feature: domain Description: HNHc Note: nucleases Location: 6 707-6 857 bp Feature: gene Location: 7677-8189 bp Ori: EMX31422.1 Feature: domain Description: PRK13699 Location: 7680-8187 bp Feature: domain Description: PRK136 99 Location: 76 80-8187 bp Feature: gene Location: 8190-8411 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT StbA (pfam06406), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK13699 (putative methylase; Provisional)

Seq: AQEW01000023.1 Escherichia coli MP021552.8 gecMP0215528.contig.22, whole genome shotgun sequence (150990 bp)
Overview 1 RT 1: 13142-17025 bp Neighborhood of RT #1 [13142, 17030] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 13142-13600 bp Ori: EMX35055.1 Gene: dut Feature: domain Description: dut Location: 13148-13595 bp Feature: domain Description: dut Location: 13148-13595 bp Feature: gene Location: 13707-14303 bp Ori: EMX35056.1 Gene: slmA Feature: domain Description: slmA Location: 13713-14289 bp Feature: domain Description: slmA Location: 137 13-14289 bp Feature: gene Location: 14349-15308 bp Ori: EMX35057.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14484-15033 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14484-15033 bp Feature: gene Location: 15606-16247 bp Ori: EMX35058.1 Gene: pyrE Feature: domain Description: pyrE Location: 15609-16242 bp Feature: domain Description: pyrE Location: 15609-16242 bp Feature: gene Location: 16314-17030 bp Ori: EMX35059.1 Gene: rph Feature: domain Description: rph Location: 16317-17025 bp Feature: domain Description: rph Location: 16317 -17 025 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)