myRT

myRT report for GCA_000354835.2_ASM35483v2

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Seq: AQEG01000147.1 Escherichia coli 180600 gec180600.contig.146, whole genome shotgun sequence (16341 bp)
Overview 1 RT 1: 4118-9926 bp Neighborhood of RT #1 [4118, 9940] HTH_ARAC DDE_Tnp_IS66_C RVT-GII GIIM IS285 CblD Feature: gene Location: 4118-4921 bp Ori: EMW73324.1 Gene: cfaD Feature: domain Description: HTH_ARAC Location: 4655-4898 bp Feature: domain Description: HTH_ARAC Location: 4655-4898 bp Feature: gene Location: 5663-5809 bp Ori: EMW73325.1 Feature: domain Description: DDE_Tnp_IS66_C Location: 5675-5786 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 5675-5786 bp Feature: gene Location: 6000-7103 bp Ori: EMW73326.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6150-6801 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 50-6801 bp Feature: domain Description: GIIM Note: maturase Location: 6879-7092 bp Feature: domain Description: GIIM Note: maturase Location: 6879-7092 bp Feature: gene Location: 7787-8386 bp Ori: EMW73327.1 Feature: domain Description: IS285 Location: 7811-8369 bp Feature: domain Description: IS285 Location: 781 1 -8369 bp Feature: gene Location: 8849-9940 bp Ori: EMW73328.1 Gene: cfaE Feature: domain Description: CblD Location: 8951-9926 bp Feature: domain Description: CblD Location: 8951 -9926 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_ARAC (smart00342), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), IS285 (COG3328), CblD (pfam07434)

Seq: AQEG01000107.1 Escherichia coli 180600 gec180600.contig.106, whole genome shotgun sequence (80165 bp)
Overview 1 RT 1: 1-4122 bp Neighborhood of RT #1 [1, 4148] YhhI YhhI IS285 RVT-GII PRK15434 GDP_FS_SDR_e Feature: gene Location: 1-801 bp Ori: EMW80351.1 Feature: domain Description: YhhI Location: 4-367 bp Feature: domain Description: YhhI Location: 4-367 bp Feature: domain Description: YhhI Location: 424-778 bp Feature: domain Description: YhhI Location: 42 4-778 bp Feature: gene Location: 905-1663 bp Ori: EMW80352.1 Feature: domain Description: IS285 Location: 935-1625 bp Feature: domain Description: IS2 85 Location: 935-162 5 bp Feature: gene Location: 1712-1951 bp Ori: EMW80353.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1829-1937 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 182 9-1937 bp Feature: gene Location: 2707-3180 bp Ori: EMW80354.1 Gene: nudD Feature: domain Description: PRK15434 Location: 2710-3160 bp Feature: domain Description: PRK15434 Location: 2 710-3160 bp Feature: gene Location: 3183-4148 bp Ori: EMW80355.1 Gene: fcl Feature: domain Description: GDP_FS_SDR_e Location: 3198-4122 bp Feature: domain Description: GDP_FS_SDR_e Location: 3198-412 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhhI (COG5433), IS285 (COG3328), RVT-GII, PRK15434 (GDP-mannose mannosyl hydrolase), GDP_FS_SDR_e (cd05239)

Seq: AQEG01000127.1 Escherichia coli 180600 gec180600.contig.126, whole genome shotgun sequence (88173 bp)
Overview 1 RT 1: 51930-55812 bp Neighborhood of RT #1 [51930, 55817] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 51930-52388 bp Ori: EMW76460.1 Gene: dut Feature: domain Description: dut Location: 51936-52383 bp Feature: domain Description: dut Location: 5193 6-523 83 bp Feature: gene Location: 52495-53091 bp Ori: EMW76461.1 Gene: slmA Feature: domain Description: slmA Location: 52501-53077 bp Feature: domain Description: slmA Location: 52501-53 077 bp Feature: gene Location: 53137-54096 bp Ori: EMW76462.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 53272-53821 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 53 272-53 821 bp Feature: gene Location: 54394-55035 bp Ori: EMW76463.1 Gene: pyrE Feature: domain Description: pyrE Location: 54397-55030 bp Feature: domain Description: pyrE Location: 543 97-5503 0 bp Feature: gene Location: 55101-55817 bp Ori: EMW76464.1 Gene: rph Feature: domain Description: rph Location: 55104-55812 bp Feature: domain Description: rph Location: 55104-55812 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)