myRT

myRT report for GCA_000354875.1_ASM35487v1

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Seq: AQDZ01000057.1 Escherichia coli 2749250 gec2749250.contig.56, whole genome shotgun sequence (19747 bp)
Overview 1 RT 1: 225-4575 bp Neighborhood of RT #1 [225, 4640] IAT_beta PRK15318 Invasin_D3 PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 225-1547 bp Feature: domain Description: IAT_beta Location: 240-954 bp Feature: domain Description: IAT_beta Location: 240-954 bp Feature: domain Description: PRK15318 Location: 1155-1278 bp Feature: domain Description: PRK1 531 8 Location: 1 1 55-1 278 bp Feature: domain Description: Invasin_D3 Location: 1293-1530 bp Feature: domain Description: Invasin_D3 Location: 1 293-1 530 bp Feature: gene Location: 1549-1941 bp Feature: domain Description: PHA02517 Location: 1555-1933 bp Feature: domain Description: PHA0251 7 Location: 1 555-1 933 bp Feature: gene Location: 2106-3614 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2364-3096 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2364-3096 bp Feature: domain Description: GIIM Note: maturase Location: 3171-3369 bp Feature: domain Description: GIIM Note: maturase Location: 31 71 -3369 bp Feature: gene Location: 3811-3924 bp Feature: gene Location: 4221-4640 bp Feature: domain Description: PHA02517 Location: 4236-4575 bp Feature: domain Description: PHA0251 7 Location: 4236-4575 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), IAT_beta (pfam11924), PRK15318 (intimin-like protein SinH; Provisional), Invasin_D3 (pfam09134)

Seq: AQDZ01000132.1 Escherichia coli 2749250 gec2749250.contig.132, whole genome shotgun sequence (20298 bp)
Overview 1 RT 1: 16719-19999 bp Neighborhood of RT #1 [16719, 20157] Ogr_Delta D RVT-GII GIIM DDE_Tnp_Tn3 rve_3 Feature: gene Location: 16719-16979 bp Feature: domain Description: Ogr_Delta Location: 16728-16869 bp Feature: domain Description: Ogr_Delta Location: 1672 8-16869 bp Feature: gene Location: 17022-17393 bp Feature: domain Description: D Location: 17052-17367 bp Feature: domain Description: D Location: 17052 -17367 bp Feature: gene Location: 17531-18862 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17816-18503 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17816-18503 bp Feature: domain Description: GIIM Note: maturase Location: 18620-18788 bp Feature: domain Description: GIIM Note: maturase Location: 1862 0-18788 bp Feature: gene Location: 19365-19556 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 19368-19476 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 19368-19476 bp Feature: gene Location: 19870-20157 bp Feature: domain Description: rve_3 Location: 19918-19999 bp Feature: domain Description: rve_3 Location: 19918-19999 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Ogr_Delta (pfam04606), D (PHA02561), RVT-GII, GIIM (pfam08388), DDE_Tnp_Tn3 (pfam01526), rve_3 (pfam13683)

Seq: AQDZ01000098.1 Escherichia coli 2749250 gec2749250.contig.97, whole genome shotgun sequence (6352 bp)
Overview 1 RT 1: 1284-6293 bp Neighborhood of RT #1 [1284, 6293] DUF3560 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 1284-2645 bp Feature: domain Description: DUF3560 Location: 1551-1908 bp Feature: domain Description: DUF3 560 Location: 1551-1908 bp Feature: gene Location: 3024-3161 bp Feature: gene Location: 4327-5994 bp Feature: RT Description: RVT_N Location: 4375-4612 bp Feature: RT Description: RVT_N Location: 43 75-4612 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4663-5305 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4663 -53 05 bp Feature: domain Description: GIIM Note: maturase Location: 5356-5590 bp Feature: domain Description: GIIM Note: maturase Location: 53 56-5590 bp Feature: domain Description: HNHc Note: nucleases Location: 5800-5959 bp Feature: domain Description: HNHc Note: nucleases Location: 5800-5959 bp Feature: gene Location: 6138-6293 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3560 (pfam12083), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)