myRT

myRT report for GCA_000354975.1_ASM35497v1

Download annotations/find similar RTs

Seq: AQDJ01000060.1 Escherichia coli 2865200 gec2865200.contig.60, whole genome shotgun sequence (197746 bp)
Overview 1 RT 1: 81569-87041 bp Neighborhood of RT #1 [81569, 87058] Prim_Zn_Ribbon COG3378 RVT-Retrons TIR_2 Pox_D5 COG3943 Feature: gene Location: 81569-83902 bp Feature: domain Description: Prim_Zn_Ribbon Location: 81659-81767 bp Feature: domain Description: Prim_Zn_Ribbon Location: 81 659-81 767 bp Feature: domain Description: COG3378 Location: 82376-83891 bp Feature: domain Description: COG3378 Location: 82376-83891 bp Feature: gene Location: 84179-84313 bp Feature: gene Location: 84513-86120 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 84804-85401 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 84804-85401 bp Feature: domain Description: TIR_2 Location: 85725-86082 bp Feature: domain Description: TIR_2 Location: 85725-86082 bp Feature: gene Location: 86358-86510 bp Feature: domain Description: Pox_D5 Location: 86361-86484 bp Feature: domain Description: Pox_D5 Location: 86361 -86484 bp Feature: gene Location: 86942-87058 bp Feature: domain Description: COG3943 Location: 86945-87041 bp Feature: domain Description: COG3943 Location: 86945-87041 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Prim_Zn_Ribbon (smart00778), COG3378 (Phage- or plasmid-associated DNA primase ), RVT-Retrons, TIR_2 (pfam13676), Pox_D5 (pfam03288), COG3943 (Uncharacterized conserved protein )

Seq: AQDJ01000074.1 Escherichia coli 2865200 gec2865200.contig.74, whole genome shotgun sequence (18959 bp)
Overview 1 RT 1: 4618-10138 bp Neighborhood of RT #1 [4618, 10138] 2A0302 PHA02517 RVT-GII GIIM Feature: gene Location: 4618-6087 bp Feature: domain Description: 2A0302 Location: 4645-6067 bp Feature: domain Description: 2 A0302 Location: 4645-6067 bp Feature: gene Location: 6690-7115 bp Feature: domain Description: PHA02517 Location: 6714-7050 bp Feature: domain Description: PHA02 517 Location: 6714-7050 bp Feature: gene Location: 7722-9230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7980-8712 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7980-8712 bp Feature: domain Description: GIIM Note: maturase Location: 8787-8985 bp Feature: domain Description: GIIM Note: maturase Location: 8787-8985 bp Feature: gene Location: 9425-9559 bp Feature: gene Location: 9995-10138 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT 2A0302 (TIGR00905), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)