myRT

myRT report for GCA_000355095.2_ASM35509v2

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Seq: AQEN01000033.1 Escherichia coli P0304777.1 gecP03047771.contig.32, whole genome shotgun sequence (570372 bp)
Overview 1 RT 1: 390856-394738 bp Neighborhood of RT #1 [390856, 394743] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 390856-391314 bp Ori: EMW97200.1 Gene: dut Feature: domain Description: dut Location: 390862-391309 bp Feature: domain Description: dut Location: 390862-391 309 bp Feature: gene Location: 391421-392017 bp Ori: EMW97201.1 Gene: slmA Feature: domain Description: slmA Location: 391427-392003 bp Feature: domain Description: slmA Location: 391 427-392003 bp Feature: gene Location: 392063-393022 bp Ori: EMW97202.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 392198-392747 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3921 98-392747 bp Feature: gene Location: 393320-393961 bp Ori: EMW97203.1 Gene: pyrE Feature: domain Description: pyrE Location: 393323-393956 bp Feature: domain Description: pyrE Location: 393323-393956 bp Feature: gene Location: 394027-394743 bp Ori: EMW97204.1 Gene: rph Feature: domain Description: rph Location: 394030-394738 bp Feature: domain Description: rph Location: 394030-394738 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: AQEN01000027.1 Escherichia coli P0304777.1 gecP03047771.contig.26, whole genome shotgun sequence (246855 bp)
Overview 1 RT 1: 147189-151322 bp Neighborhood of RT #1 [147189, 151348] YhhI YhhI IS285 RVT-GII PRK15434 GDP_FS_SDR_e Feature: gene Location: 147189-148040 bp Ori: EMX00542.1 Feature: domain Description: YhhI Location: 147192-147552 bp Feature: domain Description: YhhI Location: 147192 -147552 bp Feature: domain Description: YhhI Location: 147612-147966 bp Feature: domain Description: YhhI Location: 147612 -147966 bp Feature: gene Location: 148144-148902 bp Ori: EMX00543.1 Feature: domain Description: IS285 Location: 148174-148864 bp Feature: domain Description: IS2 85 Location: 148174-148864 bp Feature: gene Location: 148951-149190 bp Ori: EMX00544.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 149068-149176 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 149068-149176 bp Feature: gene Location: 149946-150419 bp Ori: EMX00545.1 Feature: domain Description: PRK15434 Location: 149949-150399 bp Feature: domain Description: PRK15434 Location: 149949-150399 bp Feature: gene Location: 150422-151348 bp Ori: EMX00546.1 Feature: domain Description: GDP_FS_SDR_e Location: 150425-151322 bp Feature: domain Description: GDP_FS_SDR_e Location: 15042 5-15132 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhhI (COG5433), IS285 (COG3328), RVT-GII, PRK15434 (GDP-mannose mannosyl hydrolase), GDP_FS_SDR_e (cd05239)

Seq: AQEN01000040.1 Escherichia coli P0304777.1 gecP03047771.contig.39, whole genome shotgun sequence (88423 bp)
Overview 1 RT 1: 45197-51005 bp Neighborhood of RT #1 [45197, 51019] HTH_ARAC DDE_Tnp_IS66_C RVT-GII GIIM IS285 CblD Feature: gene Location: 45197-46000 bp Ori: EMW94268.1 Gene: cfaD Feature: domain Description: HTH_ARAC Location: 45734-45977 bp Feature: domain Description: HTH_ARAC Location: 4573 4-45977 bp Feature: gene Location: 46742-46885 bp Ori: EMW94269.1 Feature: domain Description: DDE_Tnp_IS66_C Location: 46751-46862 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 46751-46862 bp Feature: gene Location: 47079-48182 bp Ori: EMW94270.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47229-47880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47229-47880 bp Feature: domain Description: GIIM Note: maturase Location: 47958-48171 bp Feature: domain Description: GIIM Note: maturase Location: 47958-48171 bp Feature: gene Location: 48866-49465 bp Ori: EMW94271.1 Feature: domain Description: IS285 Location: 48890-49448 bp Feature: domain Description: IS285 Location: 48890-49448 bp Feature: gene Location: 49928-51019 bp Ori: EMW94272.1 Gene: cfaE Feature: domain Description: CblD Location: 50030-51005 bp Feature: domain Description: CblD Location: 5003 0-51005 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_ARAC (smart00342), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), IS285 (COG3328), CblD (pfam07434)