myRT

myRT report for GCA_000355115.2_ASM35511v2

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Seq: AQEJ01000012.1 Escherichia coli ThroopD gecThroopD.contig.11, whole genome shotgun sequence (481904 bp)
Overview 1 RT 1: 475911-479066 bp Neighborhood of RT #1 [475911, 479068] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 475911-476390 bp Feature: domain Description: PHA02517 Location: 475971-476325 bp Feature: domain Description: PHA0251 7 Location: 475971 -476325 bp Feature: gene Location: 476687-476800 bp Feature: gene Location: 476997-478223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 477255-477987 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 477255-477987 bp Feature: domain Description: GIIM Note: maturase Location: 478062-478218 bp Feature: domain Description: GIIM Note: maturase Location: 478062-47821 8 bp Feature: gene Location: 478275-478505 bp Feature: gene Location: 478622-479068 bp Feature: domain Description: PHA02517 Location: 478625-479066 bp Feature: domain Description: PHA0251 7 Location: 478625-479066 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: AQEJ01000007.1 Escherichia coli ThroopD gecThroopD.contig.6, whole genome shotgun sequence (40077 bp)
Overview 1 RT 1: 1805-6061 bp Neighborhood of RT #1 [1805, 6084] PRK09183 RVT-GII GIIM HTH_ARAC Feature: gene Location: 1805-2086 bp Feature: domain Description: PRK09183 Location: 1808-2039 bp Feature: domain Description: PRK09183 Location: 1808-2 039 bp Feature: gene Location: 2317-2430 bp Feature: gene Location: 2627-4135 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2885-3617 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 885-3617 bp Feature: domain Description: GIIM Note: maturase Location: 3692-3890 bp Feature: domain Description: GIIM Note: maturase Location: 3692 -3890 bp Feature: gene Location: 4802-4948 bp Feature: gene Location: 5317-6084 bp Feature: domain Description: HTH_ARAC Location: 5818-6061 bp Feature: domain Description: HTH_ARAC Location: 5818-6061 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09183 (transposase/IS protein; Provisional), RVT-GII, GIIM (pfam08388), HTH_ARAC (smart00342)

Seq: AQEJ01000028.1 Escherichia coli ThroopD gecThroopD.contig.27, whole genome shotgun sequence (323777 bp)
Overview 1 RT 1: 319667-323543 bp Neighborhood of RT #1 [319667, 323608] PRK09692 PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 319667-320218 bp Feature: domain Description: PRK09692 Location: 319673-320216 bp Feature: domain Description: PRK09692 Location: 3 19673 -3 20216 bp Feature: gene Location: 320449-320895 bp Feature: domain Description: PHA02517 Location: 320452-320893 bp Feature: domain Description: PHA02517 Location: 3 20452-3 20893 bp Feature: gene Location: 321012-322520 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 321270-322002 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 21270-3 22002 bp Feature: domain Description: GIIM Note: maturase Location: 322077-322275 bp Feature: domain Description: GIIM Note: maturase Location: 3 22077-3 22275 bp Feature: gene Location: 322717-322830 bp Feature: gene Location: 323129-323608 bp Feature: domain Description: PHA02517 Location: 323189-323543 bp Feature: domain Description: PHA02517 Location: 3 23 189-3 23 543 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: AQEJ01000013.1 Escherichia coli ThroopD gecThroopD.contig.12, whole genome shotgun sequence (42703 bp)
Overview 1 RT 1: 38377-42292 bp Neighborhood of RT #1 [38377, 42357] umuC PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 38377-38994 bp Feature: domain Description: umuC Location: 38380-38860 bp Feature: domain Description: umuC Location: 38380-38860 bp Feature: gene Location: 39201-39572 bp Feature: domain Description: PHA02517 Location: 39204-39570 bp Feature: domain Description: PHA02517 Location: 39204 -39570 bp Feature: gene Location: 39764-41272 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40022-40754 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 0022-4 0754 bp Feature: domain Description: GIIM Note: maturase Location: 40829-41027 bp Feature: domain Description: GIIM Note: maturase Location: 4 0829-4 1027 bp Feature: gene Location: 41468-41581 bp Feature: gene Location: 41878-42357 bp Feature: domain Description: PHA02517 Location: 41938-42292 bp Feature: domain Description: PHA02517 Location: 4 1938-4 2292 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: AQEJ01000022.1 Escherichia coli ThroopD gecThroopD.contig.21, whole genome shotgun sequence (188154 bp)
Overview 1 RT 1: 52627-56509 bp Neighborhood of RT #1 [52627, 56514] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 52627-53085 bp Feature: domain Description: dut Location: 52633-53080 bp Feature: domain Description: dut Location: 5 2633-5 3080 bp Feature: gene Location: 53192-53788 bp Feature: domain Description: slmA Location: 53198-53774 bp Feature: domain Description: slmA Location: 5 3198-5 3774 bp Feature: gene Location: 53834-54793 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 53969-54518 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5 3969-5 45 18 bp Feature: gene Location: 55091-55732 bp Feature: domain Description: pyrE Location: 55094-55727 bp Feature: domain Description: pyrE Location: 5 5 094-5 5 727 bp Feature: gene Location: 55798-56514 bp Feature: domain Description: rph Location: 55801-56509 bp Feature: domain Description: rph Location: 5 5 801-5 65 09 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)