myRT

myRT report for GCA_000355175.1_ASM35517v1

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Seq: AQFF01000018.1 Escherichia coli 2720900 gec2720900.contig.17, whole genome shotgun sequence (441199 bp)
Overview 1 RT 1: 1-3007 bp Neighborhood of RT #1 [1, 3072] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 1-379 bp Ori: EMX93930.1 Feature: domain Description: PHA02517 Location: 4-379 bp Feature: domain Description: PHA0251 7 Location: 4-379 bp Feature: gene Location: 532-2040 bp Ori: EMX93931.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 790-1522 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 790-1 522 bp Feature: domain Description: GIIM Note: maturase Location: 1597-1795 bp Feature: domain Description: GIIM Note: maturase Location: 1 597-1 795 bp Feature: gene Location: 2237-2350 bp Feature: gene Location: 2647-3072 bp Ori: EMX93933.1 Feature: domain Description: PHA02517 Location: 2671-3007 bp Feature: domain Description: PHA0251 7 Location: 2671 -3007 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: AQFF01000034.1 Escherichia coli 2720900 gec2720900.contig.33, whole genome shotgun sequence (26220 bp)
Overview 1 RT 1: 22494-25596 bp Neighborhood of RT #1 [22494, 25661] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 22494-22640 bp Feature: gene Location: 22738-23154 bp Ori: EMX83617.1 Feature: domain Description: PHA02517 Location: 22741-23143 bp Feature: domain Description: PHA02 517 Location: 2 2 741-2 3143 bp Feature: gene Location: 23307-24815 bp Ori: EMX83618.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23565-24297 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 3565-2 42 97 bp Feature: domain Description: GIIM Note: maturase Location: 24372-24570 bp Feature: domain Description: GIIM Note: maturase Location: 2 4372 -2 4570 bp Feature: gene Location: 25012-25125 bp Feature: gene Location: 25422-25661 bp Ori: EMX83620.1 Feature: domain Description: PHA02517 Location: 25428-25596 bp Feature: domain Description: PHA02 517 Location: 2 542 8-2 5596 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: AQFF01000038.1 Escherichia coli 2720900 gec2720900.contig.37, whole genome shotgun sequence (40332 bp)
Overview 1 RT 1: 202-3065 bp 2 RT 2: 32997-37854 bp Neighborhood of RT #1 [202, 3073] RVT-GII GIIM PHA02517 InsE Neighborhood of RT #2 [32997, 37856] DUF1380 RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 202-1710 bp Ori: EMX82368.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 460-1192 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 460-1192 bp Feature: domain Description: GIIM Note: maturase Location: 1267-1465 bp Feature: domain Description: GIIM Note: maturase Location: 1267-1465 bp Feature: gene Location: 2317-2796 bp Ori: EMX82369.1 Feature: domain Description: PHA02517 Location: 2377-2731 bp Feature: domain Description: PHA02517 Location: 23 77-273 1 bp Feature: gene Location: 2960-3073 bp Ori: EMX82370.1 Feature: domain Description: InsE Location: 2981-3065 bp Feature: domain Description: InsE Location: 2981-3 065 bp Feature: gene Location: 32997-33419 bp Ori: EMX82410.1 Feature: domain Description: DUF1380 Location: 33000-33297 bp Feature: domain Description: DUF13 80 Location: 3 3 000-3 3 297 bp Feature: gene Location: 33416-33607 bp Feature: gene Location: 35030-36931 bp Ori: EMX82412.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35297-36128 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 5297-3 6128 bp Feature: domain Description: Intron_maturas2 Location: 36242-36500 bp Feature: domain Description: Intron_maturas2 Location: 3 6242-3 6500 bp Feature: domain Description: HNHc Note: nucleases Location: 36674-36836 bp Feature: domain Description: HNHc Note: nucleases Location: 3 6674-3 683 6 bp Feature: gene Location: 37126-37566 bp Ori: EMX82413.1 Feature: domain Description: PRK13732 Location: 37129-37564 bp Feature: domain Description: PRK13 73 2 Location: 3 7129-3 7564 bp Feature: gene Location: 37623-37856 bp Ori: EMX82414.1 Feature: domain Description: DUF905 Location: 37653-37854 bp Feature: domain Description: DUF905 Location: 3 7653 -3 7854 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), DUF1380 (pfam07128), Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: AQFF01000020.1 Escherichia coli 2720900 gec2720900.contig.19, whole genome shotgun sequence (422589 bp)
Overview 1 RT 1: 113825-122876 bp 2 RT 2: 216418-219610 bp Neighborhood of RT #1 [113825, 122887] InsE Tra5 RVT-UG8 RVT-UG3 INT_Rci_Hp1_C INT_P4_C mutS1 Neighborhood of RT #2 [216418, 219610] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 113825-114124 bp Ori: EMX92239.1 Feature: domain Description: InsE Location: 113852-114119 bp Feature: domain Description: InsE Location: 113852-114 119 bp Feature: gene Location: 114121-114987 bp Ori: EMX92240.1 Feature: domain Description: Tra5 Location: 114232-114982 bp Feature: domain Description: Tra5 Location: 114 232-114 982 bp Feature: gene Location: 115426-117444 bp Ori: EMX92241.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 115996-116446 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 115996-1164 4 6 bp Feature: gene Location: 117441-118703 bp Ori: EMX92242.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 117723-118218 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 117723-118218 bp Feature: gene Location: 118700-120160 bp Ori: EMX92243.1 Feature: domain Description: INT_Rci_Hp1_C Location: 119075-119282 bp Feature: domain Description: INT_Rci_Hp1_C Location: 119075-119282 bp Feature: domain Description: INT_P4_C Location: 119501-120038 bp Feature: domain Description: INT_P4 _C Location: 119501-120038 bp Feature: gene Location: 120320-122887 bp Ori: EMX92244.1 Gene: mutS Feature: domain Description: mutS1 Location: 120356-122876 bp Feature: domain Description: mutS1 Location: 120356-122876 bp Feature: gene Location: 216418-216657 bp Ori: EMX92340.1 Feature: domain Description: PHA02517 Location: 216421-216592 bp Feature: domain Description: PHA02517 Location: 2164 21-216592 bp Feature: gene Location: 216954-217067 bp Feature: gene Location: 217263-218771 bp Ori: EMX92342.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 217521-218253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 217521-218253 bp Feature: domain Description: GIIM Note: maturase Location: 218328-218526 bp Feature: domain Description: GIIM Note: maturase Location: 218328-218526 bp Feature: gene Location: 218900-219340 bp Ori: EMX92343.1 Feature: domain Description: PHA02517 Location: 218903-219311 bp Feature: domain Description: PHA02517 Location: 218903-219311 bp Feature: gene Location: 219395-219610 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), Tra5 (COG2801), RVT-UG8, RVT-UG3, INT_Rci_Hp1_C (cd00796), INT_P4_C (cd00801), mutS1 (TIGR01070), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: AQFF01000019.1 Escherichia coli 2720900 gec2720900.contig.18, whole genome shotgun sequence (659007 bp)
Overview 1 RT 1: 658-2053 bp Neighborhood of RT #1 [658, 2055] RVT-GII GIIM PHA02517 PHA02517 Feature: gene Location: 658-1491 bp Ori: EMX92696.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 664-973 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 664-973 bp Feature: domain Description: GIIM Note: maturase Location: 1048-1267 bp Feature: domain Description: GIIM Note: maturase Location: 1048-1267 bp Feature: gene Location: 1683-1841 bp Ori: EMX92697.1 Feature: domain Description: PHA02517 Location: 1686-1809 bp Feature: domain Description: PHA025 17 Location: 1686-1809 bp Feature: gene Location: 1849-2055 bp Ori: EMX92698.1 Feature: domain Description: PHA02517 Location: 1852-2053 bp Feature: domain Description: PHA025 17 Location: 185 2-205 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: AQFF01000003.1 Escherichia coli 2720900 gec2720900.contig.2, whole genome shotgun sequence (68785 bp)
Overview 1 RT 1: 3866-7200 bp Neighborhood of RT #1 [3866, 7223] PHA02517 RVT-GII GIIM PHA02517 DDE_Tnp_IS66_C Feature: gene Location: 3866-4345 bp Ori: EMX96386.1 Feature: domain Description: PHA02517 Location: 3926-4280 bp Feature: domain Description: PHA02517 Location: 3926 -4280 bp Feature: gene Location: 4642-4755 bp Feature: gene Location: 4952-6460 bp Ori: EMX96388.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5210-5942 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5210-5942 bp Feature: domain Description: GIIM Note: maturase Location: 6017-6215 bp Feature: domain Description: GIIM Note: maturase Location: 6 017-6 215 bp Feature: gene Location: 6577-7023 bp Ori: EMX96389.1 Feature: domain Description: PHA02517 Location: 6580-7021 bp Feature: domain Description: PHA02517 Location: 6 580-7021 bp Feature: gene Location: 7080-7223 bp Ori: EMX96390.1 Feature: domain Description: DDE_Tnp_IS66_C Location: 7095-7200 bp Feature: domain Description: DDE_Tnp_IS6 6 _C Location: 7095-7200 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817)

Seq: AQFF01000032.1 Escherichia coli 2720900 gec2720900.contig.31, whole genome shotgun sequence (7238 bp)
Overview 1 RT 1: 3251-7012 bp Neighborhood of RT #1 [3251, 7077] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 3251-3877 bp Feature: gene Location: 3920-4366 bp Ori: EMX84217.1 Feature: domain Description: PHA02517 Location: 3923-4364 bp Feature: domain Description: PHA02517 Location: 3923-4364 bp Feature: gene Location: 4483-5991 bp Ori: EMX84218.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4741-5473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47 41-547 3 bp Feature: domain Description: GIIM Note: maturase Location: 5548-5746 bp Feature: domain Description: GIIM Note: maturase Location: 5548-57 46 bp Feature: gene Location: 6188-6301 bp Feature: gene Location: 6598-7077 bp Ori: EMX84220.1 Feature: domain Description: PHA02517 Location: 6658-7012 bp Feature: domain Description: PHA02517 Location: 6658-7 012 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: AQFF01000025.1 Escherichia coli 2720900 gec2720900.contig.24, whole genome shotgun sequence (327438 bp)
Overview 1 RT 1: 320163-325584 bp Neighborhood of RT #1 [320163, 325586] Pox_D5 RVT-Retrons TIR_2 Prim_Zn_Ribbon COG3378 DUF5375 Feature: gene Location: 320163-320321 bp Feature: gene Location: 320382-320534 bp Ori: EMX89330.1 Feature: domain Description: Pox_D5 Location: 320385-320508 bp Feature: domain Description: Pox_D5 Location: 32038 5-320508 bp Feature: gene Location: 320772-322379 bp Ori: EMX89331.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 321063-321660 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 321063-321660 bp Feature: domain Description: TIR_2 Location: 321984-322341 bp Feature: domain Description: TIR_2 Location: 32198 4-322341 bp Feature: gene Location: 322990-325323 bp Ori: EMX89332.1 Feature: domain Description: Prim_Zn_Ribbon Location: 323080-323188 bp Feature: domain Description: Prim_Zn_Ribbon Location: 32308 0-32318 8 bp Feature: domain Description: COG3378 Location: 323797-325312 bp Feature: domain Description: COG3378 Location: 323797-325312 bp Feature: gene Location: 325338-325586 bp Ori: EMX89333.1 Feature: domain Description: DUF5375 Location: 325341-325584 bp Feature: domain Description: DUF5375 Location: 325341-32558 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Pox_D5 (pfam03288), RVT-Retrons, TIR_2 (pfam13676), Prim_Zn_Ribbon (smart00778), COG3378 (Phage- or plasmid-associated DNA primase ), DUF5375 (pfam17345)

Seq: AQFF01000002.1 Escherichia coli 2720900 gec2720900.contig.1, whole genome shotgun sequence (104597 bp)
Overview 1 RT 1: 70587-74669 bp Neighborhood of RT #1 [70587, 74734] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 70587-70949 bp Feature: gene Location: 71646-72041 bp Ori: EMX96528.1 Feature: domain Description: PHA02517 Location: 71649-72036 bp Feature: domain Description: PHA02517 Location: 71649 -72036 bp Feature: gene Location: 72194-73702 bp Ori: EMX96529.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72452-73184 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72452-73184 bp Feature: domain Description: GIIM Note: maturase Location: 73259-73457 bp Feature: domain Description: GIIM Note: maturase Location: 73259 -73457 bp Feature: gene Location: 73899-74012 bp Feature: gene Location: 74309-74734 bp Ori: EMX96531.1 Feature: domain Description: PHA02517 Location: 74333-74669 bp Feature: domain Description: PHA02517 Location: 74333-74669 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)