myRT

myRT report for GCA_000355195.2_ASM35519v2

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Seq: AQFD01000031.1 Escherichia coli Envira 10/1 gecEnvira10.contig.31, whole genome shotgun sequence (35290 bp)
Overview 1 RT 1: 16784-25985 bp Neighborhood of RT #1 [16784, 26209] HTH_23 InsE Peptidase_S6 autotrans_barl RVT-GII GIIM DDE_Tnp_IS66 DDE_Tnp_IS66_C COG3436 Feature: gene Location: 16784-17461 bp Feature: domain Description: HTH_23 Location: 16844-16955 bp Feature: domain Description: HTH_23 Location: 1 6844-1 6955 bp Feature: domain Description: InsE Location: 17087-17438 bp Feature: domain Description: InsE Location: 1 7087-1 7438 bp Feature: gene Location: 17709-21803 bp Feature: domain Description: Peptidase_S6 Location: 17862-20046 bp Feature: domain Description: Peptidase_S6 Location: 1 7862-20046 bp Feature: domain Description: autotrans_barl Location: 20580-21801 bp Feature: domain Description: autotrans_barl Location: 20580-21 801 bp Feature: gene Location: 22602-23933 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22887-23574 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22887-23574 bp Feature: domain Description: GIIM Note: maturase Location: 23691-23859 bp Feature: domain Description: GIIM Note: maturase Location: 23691 -23859 bp Feature: gene Location: 24639-25187 bp Feature: domain Description: DDE_Tnp_IS66 Location: 24642-25032 bp Feature: domain Description: DDE_Tnp_IS66 Location: 24642-25032 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 25053-25164 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 25053-251 64 bp Feature: gene Location: 25202-26209 bp Feature: domain Description: COG3436 Location: 25514-25985 bp Feature: domain Description: COG3436 Location: 2551 4-25985 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_23 (pfam13384), InsE (COG2963), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3436 (Transposase )

Seq: AQFD01000009.1 Escherichia coli Envira 10/1 gecEnvira10.contig.9, whole genome shotgun sequence (16799 bp)
Overview 1 RT 1: 497-2530 bp Neighborhood of RT #1 [497, 2640] RVT-GII GIIM D Ogr_Delta Feature: gene Location: 497-1828 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 782-1469 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 782 -1469 bp Feature: domain Description: GIIM Note: maturase Location: 1586-1754 bp Feature: domain Description: GIIM Note: maturase Location: 1586-1754 bp Feature: gene Location: 1966-2337 bp Feature: domain Description: D Location: 1996-2311 bp Feature: domain Description: D Location: 1996-2 311 bp Feature: gene Location: 2380-2640 bp Feature: domain Description: Ogr_Delta Location: 2389-2530 bp Feature: domain Description: Ogr_Delta Location: 2 389-2 530 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT D (PHA02561), Ogr_Delta (pfam04606), RVT-GII, GIIM (pfam08388)

Seq: AQFD01000038.1 Escherichia coli Envira 10/1 gecEnvira10.contig.38, whole genome shotgun sequence (37667 bp)
Overview 1 RT 1: 8371-16690 bp Neighborhood of RT #1 [8371, 16701] Mod Mod ResIII COG3587 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 8371-9999 bp Feature: domain Description: Mod Location: 8488-8974 bp Feature: domain Description: Mod Location: 8488-8974 bp Feature: domain Description: Mod Location: 9298-9574 bp Feature: domain Description: Mod Location: 9298-9574 bp Feature: gene Location: 10002-12872 bp Feature: domain Description: ResIII Location: 10164-10764 bp Feature: domain Description: ResIII Location: 10164-10764 bp Feature: domain Description: COG3587 Location: 11196-11391 bp Feature: domain Description: COG3 587 Location: 11196-113 91 bp Feature: gene Location: 13829-15337 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14087-14819 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14087-14819 bp Feature: domain Description: GIIM Note: maturase Location: 14894-15092 bp Feature: domain Description: GIIM Note: maturase Location: 14894-15092 bp Feature: gene Location: 15944-16186 bp Feature: domain Description: PHA02517 Location: 15947-16121 bp Feature: domain Description: PHA02517 Location: 15947-16121 bp Feature: gene Location: 16399-16701 bp Feature: domain Description: InsE Location: 16408-16690 bp Feature: domain Description: InsE Location: 16408-16690 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ResIII (pfam04851), COG3587 (Restriction endonuclease ), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), Mod (COG2189)