myRT

myRT report for GCA_000355235.2_ASM35523v2

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Seq: AQFB01000023.1 Escherichia coli Jurua 18/11 gecJurua18.contig.22, whole genome shotgun sequence (236490 bp)
Overview 1 RT 1: 55170-59052 bp Neighborhood of RT #1 [55170, 59057] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 55170-55628 bp Ori: EMX60123.1 Gene: dut Feature: domain Description: dut Location: 55176-55623 bp Feature: domain Description: dut Location: 551 76-55623 bp Feature: gene Location: 55735-56331 bp Ori: EMX60124.1 Gene: slmA Feature: domain Description: slmA Location: 55741-56317 bp Feature: domain Description: slmA Location: 55741 -5631 7 bp Feature: gene Location: 56377-57336 bp Ori: EMX60125.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 56512-57061 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5651 2-57061 bp Feature: gene Location: 57634-58275 bp Ori: EMX60126.1 Gene: pyrE Feature: domain Description: pyrE Location: 57637-58270 bp Feature: domain Description: pyrE Location: 57637-58270 bp Feature: gene Location: 58341-59057 bp Ori: EMX60127.1 Gene: rph Feature: domain Description: rph Location: 58344-59052 bp Feature: domain Description: rph Location: 58344-59052 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: AQFB01000030.1 Escherichia coli Jurua 18/11 gecJurua18.contig.29, whole genome shotgun sequence (48461 bp)
Overview 1 RT 1: 30191-36094 bp Neighborhood of RT #1 [30191, 36108] HTH_ARAC DDE_Tnp_IS66_C RVT-GII GIIM IS285 CblD Feature: gene Location: 30191-30994 bp Ori: EMX58245.1 Gene: cfaD Feature: domain Description: HTH_ARAC Location: 30728-30971 bp Feature: domain Description: HTH_ARAC Location: 3072 8-30971 bp Feature: gene Location: 31831-31977 bp Ori: EMX58246.1 Feature: domain Description: DDE_Tnp_IS66_C Location: 31843-31954 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 31843-31954 bp Feature: gene Location: 32168-33271 bp Ori: EMX58247.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32318-32969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 318-32 969 bp Feature: domain Description: GIIM Note: maturase Location: 33047-33260 bp Feature: domain Description: GIIM Note: maturase Location: 33047-332 60 bp Feature: gene Location: 33931-34554 bp Ori: EMX58248.1 Feature: domain Description: IS285 Location: 33979-34537 bp Feature: domain Description: IS2 85 Location: 33979-34537 bp Feature: gene Location: 35017-36108 bp Ori: EMX58249.1 Gene: cfaE Feature: domain Description: CblD Location: 35119-36094 bp Feature: domain Description: CblD Location: 35119-36094 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_ARAC (smart00342), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), IS285 (COG3328), CblD (pfam07434)

Seq: AQFB01000018.1 Escherichia coli Jurua 18/11 gecJurua18.contig.17, whole genome shotgun sequence (761789 bp)
Overview 1 RT 1: 158879-163051 bp Neighborhood of RT #1 [158879, 163077] YhhI YhhI IS285 RVT-GII PRK15434 GDP_FS_SDR_e Feature: gene Location: 158879-159730 bp Ori: EMX62499.1 Feature: domain Description: YhhI Location: 158882-159242 bp Feature: domain Description: YhhI Location: 158882-159242 bp Feature: domain Description: YhhI Location: 159302-159656 bp Feature: domain Description: YhhI Location: 1593 02-159656 bp Feature: gene Location: 159834-160592 bp Ori: EMX62500.1 Feature: domain Description: IS285 Location: 159864-160554 bp Feature: domain Description: IS285 Location: 159864-160554 bp Feature: gene Location: 160641-160934 bp Ori: EMX62501.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 160812-160920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 160812-160920 bp Feature: gene Location: 161636-162109 bp Ori: EMX62502.1 Feature: domain Description: PRK15434 Location: 161639-162089 bp Feature: domain Description: PRK1543 4 Location: 16163 9-162089 bp Feature: gene Location: 162112-163077 bp Ori: EMX62503.1 Feature: domain Description: GDP_FS_SDR_e Location: 162127-163051 bp Feature: domain Description: GDP_FS_SDR_e Location: 162127-163 051 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhhI (COG5433), IS285 (COG3328), RVT-GII, PRK15434 (GDP-mannose mannosyl hydrolase), GDP_FS_SDR_e (cd05239)