myRT

myRT report for GCA_000355275.2_ASM35527v2

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Seq: AQEZ01000005.1 Escherichia coli MP020940.1 gecMP020940.contig.4, whole genome shotgun sequence (380171 bp)
Overview 1 RT 1: 84707-94906 bp Neighborhood of RT #1 [84707, 94906] RVT-Retrons HTH_XRE DUF4062 PRK09692 RVT-UG7 Feature: gene Location: 84707-84979 bp Feature: gene Location: 85432-86202 bp Feature: gene Location: 86264-87973 bp Ori: EMX60393.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 86417-87014 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8641 7-8701 4 bp Feature: gene Location: 88110-88607 bp Feature: gene Location: 88847-89308 bp Ori: EMX60395.1 Gene: ahdIC Feature: domain Description: HTH_XRE Location: 88877-89045 bp Feature: domain Description: HTH_XRE Location: 88877-89045 bp Feature: gene Location: 89339-90520 bp Ori: EMX60396.1 Feature: domain Description: DUF4062 Location: 89354-89681 bp Feature: domain Description: DUF4062 Location: 89354-89681 bp Feature: gene Location: 91229-92413 bp Ori: EMX60397.1 Feature: domain Description: PRK09692 Location: 91235-92390 bp Feature: domain Description: PRK09692 Location: 91 235-92390 bp Feature: gene Location: 92406-94034 bp Ori: EMX60398.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 92814-93243 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 9281 4-93243 bp Feature: gene Location: 94031-94771 bp Feature: gene Location: 94787-94906 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, HTH_XRE (smart00530), DUF4062 (pfam13271), PRK09692 (Integrase; provisional), RVT-UG7

Seq: AQEZ01000023.1 Escherichia coli MP020940.1 gecMP020940.contig.22, whole genome shotgun sequence (69972 bp)
Overview 1 RT 1: 7157-11935 bp Neighborhood of RT #1 [7157, 11946] PRK13699 RVT_N RVT-GII GIIM HNHc StbA Feature: gene Location: 7157-7378 bp Feature: gene Location: 7379-7891 bp Ori: EMX53293.1 Feature: domain Description: PRK13699 Location: 7382-7889 bp Feature: domain Description: PRK13699 Location: 7382 -7889 bp Feature: gene Location: 8655-10313 bp Ori: EMX53294.1 Feature: domain Description: RVT_N Location: 8667-8910 bp Feature: domain Description: RVT_N Location: 8667-8910 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8955-9591 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8955-9591 bp Feature: domain Description: GIIM Note: maturase Location: 9642-9876 bp Feature: domain Description: GIIM Note: maturase Location: 9642 -9876 bp Feature: domain Description: HNHc Note: nucleases Location: 10107-10257 bp Feature: domain Description: HNHc Note: nucleases Location: 10107-102 57 bp Feature: gene Location: 10574-10699 bp Feature: gene Location: 10984-11946 bp Ori: EMX53296.1 Gene: parM Feature: domain Description: StbA Location: 10987-11935 bp Feature: domain Description: StbA Location: 10987-11935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13699 (putative methylase; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), StbA (pfam06406)

Seq: AQEZ01000033.1 Escherichia coli MP020940.1 gecMP020940.contig.32, whole genome shotgun sequence (41306 bp)
Overview 1 RT 1: 97-4176 bp 2 RT 2: 6749-10809 bp Neighborhood of RT #1 [97, 4176] RVT_N RVT-GII GIIM HNHc Neighborhood of RT #2 [6749, 10880] PRK13699 RVT_N RVT-GII GIIM HNHc DUF1281 DUF1281_C Feature: gene Location: 97-363 bp Feature: gene Location: 455-889 bp Feature: gene Location: 2040-3707 bp Ori: EMX47221.1 Feature: domain Description: RVT_N Location: 2088-2325 bp Feature: domain Description: RVT_N Location: 2088-23 25 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2376-3018 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23 76-3 018 bp Feature: domain Description: GIIM Note: maturase Location: 3069-3303 bp Feature: domain Description: GIIM Note: maturase Location: 3 069-3 3 03 bp Feature: domain Description: HNHc Note: nucleases Location: 3513-3672 bp Feature: domain Description: HNHc Note: nucleases Location: 3 513 -3 672 bp Feature: gene Location: 3780-3914 bp Feature: gene Location: 3985-4176 bp Feature: gene Location: 6749-6970 bp Feature: gene Location: 6971-7483 bp Ori: EMX47229.1 Feature: domain Description: PRK13699 Location: 6974-7481 bp Feature: domain Description: PRK13 699 Location: 6974-7481 bp Feature: gene Location: 8247-9905 bp Ori: EMX47230.1 Feature: domain Description: RVT_N Location: 8259-8502 bp Feature: domain Description: RVT_N Location: 8259-8502 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8547-9183 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8547-9183 bp Feature: domain Description: GIIM Note: maturase Location: 9234-9468 bp Feature: domain Description: GIIM Note: maturase Location: 923 4-9468 bp Feature: domain Description: HNHc Note: nucleases Location: 9699-9849 bp Feature: domain Description: HNHc Note: nucleases Location: 9699-9849 bp Feature: gene Location: 10165-10290 bp Feature: gene Location: 10443-10880 bp Ori: EMX47232.1 Feature: domain Description: DUF1281 Location: 10446-10575 bp Feature: domain Description: DUF1281 Location: 10446-10575 bp Feature: domain Description: DUF1281_C Location: 10581-10809 bp Feature: domain Description: DUF1281_C Location: 10581-10809 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK13699 (putative methylase; Provisional), DUF1281 (pfam06924), DUF1281_C (pfam18406)