myRT

myRT report for GCA_000355555.2_ASM35555v2

Download annotations/find similar RTs

Seq: AQDV01000113.1 Escherichia coli 2780750 gec2780750.contig.112, whole genome shotgun sequence (11953 bp)
Overview 1 RT 1: 962-4683 bp 2 RT 2: 7256-11316 bp Neighborhood of RT #1 [962, 4683] RVT_N RVT-GII GIIM HNHc Neighborhood of RT #2 [7256, 11387] PRK13699 RVT_N RVT-GII GIIM HNHc DUF1281 DUF1281_C Feature: gene Location: 962-1396 bp Feature: gene Location: 1687-1833 bp Feature: gene Location: 2547-4214 bp Feature: RT Description: RVT_N Location: 2595-2832 bp Feature: RT Description: RVT_N Location: 2595-2832 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2883-3525 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2883-3525 bp Feature: domain Description: GIIM Note: maturase Location: 3576-3810 bp Feature: domain Description: GIIM Note: maturase Location: 3576-381 0 bp Feature: domain Description: HNHc Note: nucleases Location: 4020-4179 bp Feature: domain Description: HNHc Note: nucleases Location: 4020-41 79 bp Feature: gene Location: 4287-4421 bp Feature: gene Location: 4492-4683 bp Feature: gene Location: 7256-7477 bp Feature: gene Location: 7478-7990 bp Feature: domain Description: PRK13699 Location: 7481-7988 bp Feature: domain Description: PRK1 3699 Location: 7481 -7988 bp Feature: gene Location: 8754-10412 bp Feature: RT Description: RVT_N Location: 8766-9009 bp Feature: RT Description: RVT_N Location: 8766-9009 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9054-9690 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9054-9690 bp Feature: domain Description: GIIM Note: maturase Location: 9741-9975 bp Feature: domain Description: GIIM Note: maturase Location: 9741 -9975 bp Feature: domain Description: HNHc Note: nucleases Location: 10206-10356 bp Feature: domain Description: HNHc Note: nucleases Location: 1 0206-1 0356 bp Feature: gene Location: 10672-10797 bp Feature: gene Location: 10950-11387 bp Feature: domain Description: DUF1281 Location: 10953-11082 bp Feature: domain Description: DUF1 281 Location: 1 0953-1 1 082 bp Feature: domain Description: DUF1281_C Location: 11088-11316 bp Feature: domain Description: DUF1 281 _C Location: 1 1 088-1 1 31 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1281 (pfam06924), DUF1281_C (pfam18406), PRK13699 (putative methylase; Provisional)

Seq: AQDV01000034.1 Escherichia coli 2780750 gec2780750.contig.33, whole genome shotgun sequence (28714 bp)
Overview 1 RT 1: 8733-12839 bp 2 RT 2: 21905-25076 bp Neighborhood of RT #1 [8733, 12847] Rve RVT-GII InsE PIN_VapC4-5_FitB-like Neighborhood of RT #2 [21905, 25078] PRK10276 RVT-GII InsA DDE_Tnp_IS1 Feature: gene Location: 8733-8912 bp Feature: gene Location: 9045-9749 bp Feature: domain Description: Rve Location: 9048-9693 bp Feature: domain Description: Rve Location: 9048-9693 bp Feature: gene Location: 9786-10829 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10044-10776 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10044-10776 bp Feature: gene Location: 11903-12187 bp Feature: domain Description: InsE Location: 11915-12176 bp Feature: domain Description: InsE Location: 11915-12 176 bp Feature: gene Location: 12431-12847 bp Feature: domain Description: PIN_VapC4-5_FitB-like Location: 12449-12839 bp Feature: domain Description: PIN_VapC4-5_FitB-like Location: 12 449-12 839 bp Feature: gene Location: 21905-22336 bp Feature: domain Description: PRK10276 Location: 21956-22319 bp Feature: domain Description: PRK102 76 Location: 2 1956-2 2 319 bp Feature: gene Location: 22913-23107 bp Feature: gene Location: 23255-24229 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23264-23837 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 32 64-2 3837 bp Feature: gene Location: 24381-24656 bp Feature: domain Description: InsA Location: 24387-24648 bp Feature: domain Description: InsA Location: 2 4387-2 4648 bp Feature: gene Location: 24782-25078 bp Feature: domain Description: DDE_Tnp_IS1 Location: 24785-25076 bp Feature: domain Description: DDE_Tnp_IS1 Location: 2 4785-2 5076 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PIN_VapC4-5_FitB-like (cd18754), Rve (COG3316), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), InsA (COG3677), DDE_Tnp_IS1 (pfam03400)