myRT

myRT report for GCA_000355785.1_CloButy1.0

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Seq: APKZ01000068.1 Clostridium butyricum DKU-01 5184_68, whole genome shotgun sequence (7012 bp)
Overview 1 RT 1: 1783-5738 bp Neighborhood of RT #1 [1783, 5980] RVT-GII GIIM Dck YgiQ Feature: gene Location: 1783-3198 bp Ori: EMU52160.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2140-2758 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 40-2758 bp Feature: domain Description: GIIM Note: maturase Location: 2809-3037 bp Feature: domain Description: GIIM Note: maturase Location: 2809-3037 bp Feature: gene Location: 4373-4963 bp Ori: EMU52161.1 Feature: domain Description: Dck Location: 4376-4922 bp Feature: domain Description: Dck Location: 4376-4922 bp Feature: gene Location: 5000-5980 bp Ori: EMU52162.1 Feature: domain Description: YgiQ Location: 5006-5738 bp Feature: domain Description: YgiQ Location: 5006-5738 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Dck (COG1428), YgiQ (COG1032)

Seq: APKZ01000060.1 Clostridium butyricum DKU-01 5184_60, whole genome shotgun sequence (75413 bp)
Overview 1 RT 1: 16460-23202 bp Neighborhood of RT #1 [16460, 23213] HTH_3 COG4584 COG4584 Acetyltransf_3 RVT-UG28 DDE_Tnp_1 GlpR Feature: gene Location: 16460-17755 bp Ori: EMU52599.1 Feature: domain Description: HTH_3 Location: 16553-16655 bp Feature: domain Description: HTH_3 Location: 16553-16655 bp Feature: domain Description: COG4584 Location: 16664-16835 bp Feature: domain Description: COG4584 Location: 16664-16835 bp Feature: domain Description: COG4584 Location: 16877-17264 bp Feature: domain Description: COG4584 Location: 16877-172 64 bp Feature: gene Location: 17943-18413 bp Ori: EMU52600.1 Feature: domain Description: Acetyltransf_3 Location: 18102-18333 bp Feature: domain Description: Acetyltransf_3 Location: 18102 -18333 bp Feature: gene Location: 19072-20580 bp Ori: EMU52601.1 Feature: RT Description: RVT-UG28 Note: UG28 RT Location: 19351-19990 bp Feature: RT Description: RVT-UG2 8 Note: UG2 8 RT Location: 19351-19990 bp Feature: gene Location: 20889-22037 bp Ori: EMU52602.1 Feature: domain Description: DDE_Tnp_1 Location: 21282-21873 bp Feature: domain Description: DDE_Tnp_1 Location: 2 12 82 -2 1873 bp Feature: gene Location: 22464-23213 bp Ori: EMU52603.1 Feature: domain Description: GlpR Location: 22470-23202 bp Feature: domain Description: GlpR Location: 2 2 470-2 32 02 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_3 (pfam01381), COG4584 (Transposase ), Acetyltransf_3 (pfam13302), RVT-UG28, DDE_Tnp_1 (pfam01609), GlpR (COG1349)

Seq: APKZ01000022.1 Clostridium butyricum DKU-01 5184_22, whole genome shotgun sequence (118051 bp)
Overview 1 RT 1: 108695-115703 bp Neighborhood of RT #1 [108695, 115846] YdiU RVT-UG24 PadR Feature: gene Location: 108695-110170 bp Ori: EMU54881.1 Feature: domain Description: YdiU Location: 108725-110168 bp Feature: domain Description: YdiU Location: 108725-110168 bp Feature: gene Location: 110780-111352 bp Feature: gene Location: 111342-114602 bp Ori: EMU54883.1 Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 111849-112329 bp Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 111849-1123 29 bp Feature: gene Location: 114988-115227 bp Feature: gene Location: 115319-115846 bp Ori: EMU54885.1 Feature: domain Description: PadR Location: 115331-115703 bp Feature: domain Description: PadR Location: 1153 3 1-115703 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YdiU (COG0397), RVT-UG24, PadR (pfam03551)