myRT

myRT report for GCA_000356065.2_ASM35606v2

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Seq: AQEC01000047.1 Escherichia coli 2729250 gec2729250.contig.46, whole genome shotgun sequence (46837 bp)
Overview 1 RT 1: 11644-16788 bp Neighborhood of RT #1 [11644, 16799] LysM IAT_beta PRK15318 Invasin_D3 PHA02517 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 11644-13374 bp Feature: domain Description: LysM Location: 11737-11875 bp Feature: domain Description: LysM Location: 1 1 737-1 1 875 bp Feature: domain Description: IAT_beta Location: 11956-12781 bp Feature: domain Description: IAT_beta Location: 1 1 956-1 2781 bp Feature: domain Description: PRK15318 Location: 12982-13105 bp Feature: domain Description: PRK1 531 8 Location: 1 2982-1 31 05 bp Feature: domain Description: Invasin_D3 Location: 13120-13357 bp Feature: domain Description: Invasin_D3 Location: 1 31 20-1 3357 bp Feature: gene Location: 13376-13768 bp Feature: domain Description: PHA02517 Location: 13382-13760 bp Feature: domain Description: PHA0251 7 Location: 1 3382-1 3760 bp Feature: gene Location: 13933-15441 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14191-14923 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 41 91 -1 4923 bp Feature: domain Description: GIIM Note: maturase Location: 14998-15196 bp Feature: domain Description: GIIM Note: maturase Location: 1 4998-1 51 96 bp Feature: gene Location: 16048-16467 bp Feature: domain Description: PHA02517 Location: 16063-16402 bp Feature: domain Description: PHA0251 7 Location: 1 6063-1 6402 bp Feature: gene Location: 16515-16799 bp Feature: domain Description: InsE Location: 16527-16788 bp Feature: domain Description: InsE Location: 1 6527-1 6788 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LysM (smart00257), IAT_beta (pfam11924), PRK15318 (intimin-like protein SinH; Provisional), Invasin_D3 (pfam09134), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963)

Seq: AQEC01000067.1 Escherichia coli 2729250 gec2729250.contig.66, whole genome shotgun sequence (17618 bp)
Overview 1 RT 1: 14104-17384 bp Neighborhood of RT #1 [14104, 17542] Ogr_Delta D RVT-GII GIIM DDE_Tnp_Tn3 rve_3 Feature: gene Location: 14104-14364 bp Feature: domain Description: Ogr_Delta Location: 14113-14254 bp Feature: domain Description: Ogr_Delta Location: 14113-142 54 bp Feature: gene Location: 14407-14778 bp Feature: domain Description: D Location: 14437-14752 bp Feature: domain Description: D Location: 14437-14752 bp Feature: gene Location: 14916-16247 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15201-15888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 152 01-15888 bp Feature: domain Description: GIIM Note: maturase Location: 16005-16173 bp Feature: domain Description: GIIM Note: maturase Location: 16005-16173 bp Feature: gene Location: 16750-16941 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 16753-16861 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 16753-16861 bp Feature: gene Location: 17255-17542 bp Feature: domain Description: rve_3 Location: 17303-17384 bp Feature: domain Description: rve_3 Location: 17303-17384 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Ogr_Delta (pfam04606), D (PHA02561), RVT-GII, GIIM (pfam08388), DDE_Tnp_Tn3 (pfam01526), rve_3 (pfam13683)

Seq: AQEC01000097.1 Escherichia coli 2729250 gec2729250.contig.96, whole genome shotgun sequence (8062 bp)
Overview 1 RT 1: 77-7594 bp Neighborhood of RT #1 [77, 7596] rve_3 DDE_Tnp_Tn3 RVT-GII GIIM Peptidase_S6 autotrans_barl Feature: gene Location: 77-364 bp Feature: domain Description: rve_3 Location: 125-206 bp Feature: domain Description: rve_3 Location: 125-206 bp Feature: gene Location: 678-869 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 681-789 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 681-789 bp Feature: gene Location: 1372-2703 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1657-2344 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1657-23 44 bp Feature: domain Description: GIIM Note: maturase Location: 2461-2629 bp Feature: domain Description: GIIM Note: maturase Location: 2461-2629 bp Feature: gene Location: 3502-7596 bp Feature: domain Description: Peptidase_S6 Location: 3655-5839 bp Feature: domain Description: Peptidase_S6 Location: 3 655-583 9 bp Feature: domain Description: autotrans_barl Location: 6373-7594 bp Feature: domain Description: autotrans_barl Location: 63 73 -7594 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), DDE_Tnp_Tn3 (pfam01526), rve_3 (pfam13683)

Seq: AQEC01000059.1 Escherichia coli 2729250 gec2729250.contig.58, whole genome shotgun sequence (14761 bp)
Overview 1 RT 1: 1955-6145 bp Neighborhood of RT #1 [1955, 6145] DUF905 PRK13732 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 1955-2188 bp Feature: domain Description: DUF905 Location: 1985-2183 bp Feature: domain Description: DUF905 Location: 1985-2183 bp Feature: gene Location: 2245-2772 bp Feature: domain Description: PRK13732 Location: 2248-2770 bp Feature: domain Description: PRK13732 Location: 224 8-2770 bp Feature: gene Location: 3974-5641 bp Feature: RT Description: RVT_N Location: 4022-4259 bp Feature: RT Description: RVT_N Location: 4 022-4 259 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4310-4952 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 310-4 952 bp Feature: domain Description: GIIM Note: maturase Location: 5003-5237 bp Feature: domain Description: GIIM Note: maturase Location: 5003-5237 bp Feature: domain Description: HNHc Note: nucleases Location: 5447-5606 bp Feature: domain Description: HNHc Note: nucleases Location: 54 4 7-5606 bp Feature: gene Location: 5785-5940 bp Feature: gene Location: 5954-6145 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)