myRT

myRT report for GCA_000356105.2_ASM35610v2

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Seq: AQGI01000095.1 Escherichia coli 174900 gec174900.contig.95, whole genome shotgun sequence (3253 bp)
Overview 1 RT 1: 1-2943 bp Neighborhood of RT #1 [1, 3008] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 1-237 bp Ori: EMZ59816.1 Feature: domain Description: PHA02517 Location: 4-238 bp Feature: domain Description: PHA0251 7 Location: 4-238 bp Feature: gene Location: 414-1922 bp Ori: EMZ59817.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 672-1404 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 672-1 404 bp Feature: domain Description: GIIM Note: maturase Location: 1479-1677 bp Feature: domain Description: GIIM Note: maturase Location: 1 479-1 677 bp Feature: gene Location: 2529-3008 bp Ori: EMZ59818.1 Feature: domain Description: PHA02517 Location: 2589-2943 bp Feature: domain Description: PHA0251 7 Location: 2589-2943 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: AQGI01000036.1 Escherichia coli 174900 gec174900.contig.36, whole genome shotgun sequence (131778 bp)
Overview 1 RT 1: 42948-53870 bp Neighborhood of RT #1 [42948, 53887] RVT-Retrons HTH_XRE DUF4062 PRK09692 RVT-UG7 Psu Feature: gene Location: 42948-43220 bp Feature: gene Location: 43673-44443 bp Feature: gene Location: 44505-46214 bp Ori: EMZ69714.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 44658-45255 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 44658-452 55 bp Feature: gene Location: 46351-46848 bp Feature: gene Location: 47088-47549 bp Ori: EMZ69716.1 Gene: ahdIC Feature: domain Description: HTH_XRE Location: 47118-47286 bp Feature: domain Description: HTH_XRE Location: 47118-472 86 bp Feature: gene Location: 47580-48761 bp Ori: EMZ69717.1 Feature: domain Description: DUF4062 Location: 47595-47922 bp Feature: domain Description: DUF4062 Location: 47595-4792 2 bp Feature: gene Location: 49470-50654 bp Ori: EMZ69718.1 Feature: domain Description: PRK09692 Location: 49476-50631 bp Feature: domain Description: PRK09692 Location: 49476-50631 bp Feature: gene Location: 50647-52275 bp Ori: EMZ69719.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 51055-51484 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 51055-51484 bp Feature: gene Location: 52272-53012 bp Feature: gene Location: 53315-53887 bp Ori: EMZ69721.1 Feature: domain Description: Psu Location: 53333-53870 bp Feature: domain Description: Psu Location: 53333-53870 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, HTH_XRE (smart00530), DUF4062 (pfam13271), PRK09692 (Integrase; provisional), RVT-UG7, Psu (pfam07455)