myRT

myRT report for GCA_000356125.1_ASM35612v1

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Seq: AQEF01000121.1 Escherichia coli 199900.1 gec1999001.contig.121, whole genome shotgun sequence (15084 bp)
Overview 1 RT 1: 4011-9819 bp Neighborhood of RT #1 [4011, 9833] HTH_ARAC DDE_Tnp_IS66_C RVT-GII GIIM IS285 CblD Feature: gene Location: 4011-4814 bp Ori: EMZ73653.1 Gene: cfaD Feature: domain Description: HTH_ARAC Location: 4548-4791 bp Feature: domain Description: HTH_ARAC Location: 4548-4791 bp Feature: gene Location: 5556-5699 bp Ori: EMZ73654.1 Feature: domain Description: DDE_Tnp_IS66_C Location: 5565-5676 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 5565-5676 bp Feature: gene Location: 5893-6996 bp Ori: EMZ73655.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6043-6694 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6043-6694 bp Feature: domain Description: GIIM Note: maturase Location: 6772-6985 bp Feature: domain Description: GIIM Note: maturase Location: 6772-6985 bp Feature: gene Location: 7680-8279 bp Ori: EMZ73656.1 Feature: domain Description: IS285 Location: 7704-8262 bp Feature: domain Description: IS285 Location: 7704-8262 bp Feature: gene Location: 8742-9833 bp Ori: EMZ73657.1 Gene: cfaE Feature: domain Description: CblD Location: 8844-9819 bp Feature: domain Description: CblD Location: 8844-981 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_ARAC (smart00342), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), IS285 (COG3328), CblD (pfam07434)

Seq: AQEF01000076.1 Escherichia coli 199900.1 gec1999001.contig.76, whole genome shotgun sequence (114640 bp)
Overview 1 RT 1: 1-3083 bp Neighborhood of RT #1 [1, 3100] RVT-GII IS285 YhhI YhhI Feature: gene Location: 1-403 bp Feature: gene Location: 1105-1398 bp Ori: EMZ79789.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1276-1384 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 76-1384 bp Feature: gene Location: 1447-2205 bp Ori: EMZ79790.1 Feature: domain Description: IS285 Location: 1477-2167 bp Feature: domain Description: IS2 85 Location: 1477-2 167 bp Feature: gene Location: 2309-3100 bp Ori: EMZ79791.1 Feature: domain Description: YhhI Location: 2312-2675 bp Feature: domain Description: YhhI Location: 2 312 -2 675 bp Feature: domain Description: YhhI Location: 2732-3083 bp Feature: domain Description: YhhI Location: 2 732 -3083 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, IS285 (COG3328), YhhI (COG5433)

Seq: AQEF01000107.1 Escherichia coli 199900.1 gec1999001.contig.107, whole genome shotgun sequence (87576 bp)
Overview 1 RT 1: 51352-55234 bp Neighborhood of RT #1 [51352, 55239] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 51352-51810 bp Ori: EMZ75550.1 Gene: dut Feature: domain Description: dut Location: 51358-51805 bp Feature: domain Description: dut Location: 513 58-51805 bp Feature: gene Location: 51917-52513 bp Ori: EMZ75551.1 Gene: slmA Feature: domain Description: slmA Location: 51923-52499 bp Feature: domain Description: slmA Location: 51923 -52499 bp Feature: gene Location: 52559-53518 bp Ori: EMZ75552.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 52694-53243 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 52694-53 243 bp Feature: gene Location: 53816-54457 bp Ori: EMZ75553.1 Gene: pyrE Feature: domain Description: pyrE Location: 53819-54452 bp Feature: domain Description: pyrE Location: 53 819-54452 bp Feature: gene Location: 54523-55239 bp Ori: EMZ75554.1 Gene: rph Feature: domain Description: rph Location: 54526-55234 bp Feature: domain Description: rph Location: 54526-5523 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)