myRT

myRT report for GCA_000356185.2_ASM35618v2

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Seq: AQEE01000114.1 Escherichia coli 2722950 gec2722950.contig.123, whole genome shotgun sequence (23490 bp)
Overview 1 RT 1: 2863-7142 bp Neighborhood of RT #1 [2863, 7153] PRK13732 RVT-GII GIIM PHA02517 umuC Feature: gene Location: 2863-3729 bp Feature: domain Description: PRK13732 Location: 3526-3673 bp Feature: domain Description: PRK1 3732 Location: 3526-3673 bp Feature: gene Location: 4214-4336 bp Feature: gene Location: 4375-5883 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4633-5365 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4633-5365 bp Feature: domain Description: GIIM Note: maturase Location: 5440-5638 bp Feature: domain Description: GIIM Note: maturase Location: 5440-5638 bp Feature: gene Location: 6075-6446 bp Feature: domain Description: PHA02517 Location: 6078-6444 bp Feature: domain Description: PHA0251 7 Location: 6078-6444 bp Feature: gene Location: 6653-7153 bp Feature: domain Description: umuC Location: 6656-7142 bp Feature: domain Description: umuC Location: 6656-71 42 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), umuC (PRK03609)

Seq: AQEE01000132.1 Escherichia coli 2722950 gec2722950.contig.141, whole genome shotgun sequence (140080 bp)
Overview 1 RT 1: 77474-82595 bp Neighborhood of RT #1 [77474, 82595] Prim_Zn_Ribbon COG3378 RVT-Retrons TIR_2 Pox_D5 Feature: gene Location: 77474-79807 bp Feature: domain Description: Prim_Zn_Ribbon Location: 77564-77672 bp Feature: domain Description: Prim_Zn_Ribbon Location: 77564-77672 bp Feature: domain Description: COG3378 Location: 78281-79796 bp Feature: domain Description: COG3378 Location: 782 81-79796 bp Feature: gene Location: 80084-80218 bp Feature: gene Location: 80394-82025 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 80709-81306 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 80709-81306 bp Feature: domain Description: TIR_2 Location: 81630-81987 bp Feature: domain Description: TIR_2 Location: 81630-81987 bp Feature: gene Location: 82263-82415 bp Feature: domain Description: Pox_D5 Location: 82266-82389 bp Feature: domain Description: Pox_D5 Location: 82 2 66-82 389 bp Feature: gene Location: 82476-82595 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Prim_Zn_Ribbon (smart00778), COG3378 (Phage- or plasmid-associated DNA primase ), RVT-Retrons, TIR_2 (pfam13676), Pox_D5 (pfam03288)