myRT

myRT report for GCA_000356205.2_ASM35620v2

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Seq: APXE01000221.1 Escherichia coli 2730450 gec2730450.contig.220, whole genome shotgun sequence (12725 bp)
Overview 1 RT 1: 4165-7640 bp Neighborhood of RT #1 [4165, 7645] DUF4094 Peptidase_S74 RVT-UG17 PRK10597 Feature: gene Location: 4165-4869 bp Ori: ENA73040.1 Feature: domain Description: DUF4094 Location: 4207-4297 bp Feature: domain Description: DUF4094 Location: 4207-4297 bp Feature: domain Description: Peptidase_S74 Location: 4513-4672 bp Feature: domain Description: Peptidase_S74 Location: 451 3-4672 bp Feature: gene Location: 4880-5167 bp Feature: gene Location: 5275-6645 bp Ori: ENA73042.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 5503-6109 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 5503-61 09 bp Feature: gene Location: 7133-7249 bp Feature: gene Location: 7397-7645 bp Ori: ENA73044.1 Feature: domain Description: PRK10597 Location: 7400-7640 bp Feature: domain Description: PRK1 0597 Location: 7400-7640 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4094 (pfam13334), Peptidase_S74 (pfam13884), RVT-UG17, PRK10597 (DNA damage-inducible protein I; Provisional)

Seq: APXE01000201.1 Escherichia coli 2730450 gec2730450.contig.200, whole genome shotgun sequence (80043 bp)
Overview 1 RT 1: 76606-80042 bp Neighborhood of RT #1 [76606, 80043] PRK09692 RVT-UG5 Zn_Tnp_IS1 HTH_Tnp_IS1 Feature: gene Location: 76606-77862 bp Ori: ENA73472.1 Feature: domain Description: PRK09692 Location: 76615-77818 bp Feature: domain Description: PRK09692 Location: 76615-77818 bp Feature: gene Location: 77955-78107 bp Feature: gene Location: 78094-79785 bp Ori: ENA73474.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 78430-78958 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 78430-78958 bp Feature: gene Location: 79865-80043 bp Ori: ENA73475.1 Feature: domain Description: Zn_Tnp_IS1 Location: 79868-79922 bp Feature: domain Description: Zn_Tnp_IS1 Location: 79868-7992 2 bp Feature: domain Description: HTH_Tnp_IS1 Location: 79943-80042 bp Feature: domain Description: HTH_Tnp_IS1 Location: 79943-80042 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), RVT-UG5, Zn_Tnp_IS1 (pfam03811), HTH_Tnp_IS1 (pfam12759)

Seq: APXE01000178.1 Escherichia coli 2730450 gec2730450.contig.177, whole genome shotgun sequence (44936 bp)
Overview 1 RT 1: 335-3922 bp Neighborhood of RT #1 [335, 3924] RVT_N RVT-GII GIIM HNHc gntK PRK14987 Feature: gene Location: 335-2002 bp Ori: ENA75325.1 Feature: domain Description: RVT_N Location: 383-620 bp Feature: domain Description: RVT_N Location: 3 83 -620 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 671-1313 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 671-13 13 bp Feature: domain Description: GIIM Note: maturase Location: 1364-1598 bp Feature: domain Description: GIIM Note: maturase Location: 13 64-1598 bp Feature: domain Description: HNHc Note: nucleases Location: 1808-1967 bp Feature: domain Description: HNHc Note: nucleases Location: 1808-1967 bp Feature: gene Location: 2263-2751 bp Ori: ENA75326.1 Gene: gntK Feature: domain Description: gntK Location: 2266-2746 bp Feature: domain Description: gntK Location: 2266-2746 bp Feature: gene Location: 2929-3924 bp Ori: ENA75327.1 Gene: gntR Feature: domain Description: PRK14987 Location: 2932-3922 bp Feature: domain Description: PRK14987 Location: 293 2-3 922 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), gntK (PRK11545), PRK14987 (HTH-type transcriptional regulator GntR)