myRT

myRT report for GCA_000356385.1_ASM35638v1

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Seq: APXN01000110.1 Escherichia coli BCE030_MS-09 gecBCE030MS09.contig.109, whole genome shotgun sequence (151709 bp)
Overview 1 RT 1: 104871-110866 bp Neighborhood of RT #1 [104871, 110868] PRK10739 PRK10472 RVT_N RVT-GII GIIM HNHc gntK PRK14987 Feature: gene Location: 104871-105464 bp Ori: ENB25614.1 Feature: domain Description: PRK10739 Location: 104874-105459 bp Feature: domain Description: PRK1 0739 Location: 1 04874-1 05459 bp Feature: gene Location: 105521-106642 bp Ori: ENB25615.1 Gene: gntU Feature: domain Description: PRK10472 Location: 105524-106637 bp Feature: domain Description: PRK1 0472 Location: 1 05524-1 06637 bp Feature: gene Location: 107279-108946 bp Ori: ENB25616.1 Feature: domain Description: RVT_N Location: 107327-107564 bp Feature: domain Description: RVT_N Location: 1 07327-1 07564 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 107615-108257 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0761 5-1 08257 bp Feature: domain Description: GIIM Note: maturase Location: 108308-108542 bp Feature: domain Description: GIIM Note: maturase Location: 1 08308-1 08542 bp Feature: domain Description: HNHc Note: nucleases Location: 108752-108911 bp Feature: domain Description: HNHc Note: nucleases Location: 1 08752-1 0891 1 bp Feature: gene Location: 109207-109695 bp Ori: ENB25617.1 Gene: gntK Feature: domain Description: gntK Location: 109210-109690 bp Feature: domain Description: gntK Location: 1 0921 0-1 09690 bp Feature: gene Location: 109873-110868 bp Ori: ENB25618.1 Gene: gntR Feature: domain Description: PRK14987 Location: 109876-110866 bp Feature: domain Description: PRK1 4987 Location: 1 09876-1 1 0866 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10739 (YhgN family NAAT transporter), PRK10472 (low affinity gluconate transporter; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), gntK (PRK11545), PRK14987 (HTH-type transcriptional regulator GntR)

Seq: APXN01000150.1 Escherichia coli BCE030_MS-09 gecBCE030MS09.contig.149, whole genome shotgun sequence (34006 bp)
Overview 1 RT 1: 1205-4680 bp Neighborhood of RT #1 [1205, 4685] DUF4094 Peptidase_S74 RVT-UG17 PRK10597 Feature: gene Location: 1205-1909 bp Ori: ENB22994.1 Feature: domain Description: DUF4094 Location: 1247-1337 bp Feature: domain Description: DUF4094 Location: 12 47-1337 bp Feature: domain Description: Peptidase_S74 Location: 1553-1712 bp Feature: domain Description: Peptidase_S74 Location: 1553-1712 bp Feature: gene Location: 1920-2207 bp Feature: gene Location: 2315-3685 bp Ori: ENB22996.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 2543-3149 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 2 543-3149 bp Feature: gene Location: 4173-4289 bp Feature: gene Location: 4437-4685 bp Ori: ENB22998.1 Feature: domain Description: PRK10597 Location: 4440-4680 bp Feature: domain Description: PRK10597 Location: 4440-4680 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4094 (pfam13334), Peptidase_S74 (pfam13884), RVT-UG17, PRK10597 (DNA damage-inducible protein I; Provisional)

Seq: APXN01000131.1 Escherichia coli BCE030_MS-09 gecBCE030MS09.contig.130, whole genome shotgun sequence (80189 bp)
Overview 1 RT 1: 76169-80162 bp Neighborhood of RT #1 [76169, 80173] PRK09692 RVT-UG5 Zn_Tnp_IS1 HTH_Tnp_IS1 Feature: gene Location: 76169-76297 bp Feature: gene Location: 76691-77947 bp Ori: ENB23852.1 Feature: domain Description: PRK09692 Location: 76700-77903 bp Feature: domain Description: PRK09692 Location: 76700-77903 bp Feature: gene Location: 78040-79869 bp Ori: ENB23853.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 78514-79042 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 78514-79042 bp Feature: gene Location: 79949-80173 bp Ori: ENB23854.1 Feature: domain Description: Zn_Tnp_IS1 Location: 79952-80006 bp Feature: domain Description: Zn_Tnp_IS1 Location: 79952-80006 bp Feature: domain Description: HTH_Tnp_IS1 Location: 80027-80162 bp Feature: domain Description: HTH_Tnp_IS1 Location: 80027-80162 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), RVT-UG5, Zn_Tnp_IS1 (pfam03811), HTH_Tnp_IS1 (pfam12759)

Seq: APXN01000095.1 Escherichia coli BCE030_MS-09 gecBCE030MS09.contig.94, whole genome shotgun sequence (561 bp)
Overview 1 RT 1: 1-556 bp Neighborhood of RT #1 [1, 560] RVT-GII Feature: gene Location: 1-560 bp Ori: ENB26450.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 259-556 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 259-556 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII