myRT

myRT report for GCA_000356405.2_ASM35640v2

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Seq: APXO01000122.1 Escherichia coli BCE032_MS-12 gecBCE032MS12.contig.122, whole genome shotgun sequence (80343 bp)
Overview 1 RT 1: 76286-80249 bp Neighborhood of RT #1 [76286, 80343] PRK09692 RVT-UG5 Zn_Tnp_IS1 HTH_Tnp_IS1 Feature: gene Location: 76286-76414 bp Feature: gene Location: 76808-78064 bp Ori: ENB29282.1 Feature: domain Description: PRK09692 Location: 76817-78020 bp Feature: domain Description: PRK09692 Location: 7681 7-78020 bp Feature: gene Location: 78157-79986 bp Ori: ENB29213.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 78631-79159 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 78631 -791 59 bp Feature: gene Location: 80066-80343 bp Ori: ENB29224.1 Feature: domain Description: Zn_Tnp_IS1 Location: 80069-80123 bp Feature: domain Description: Zn_Tnp_IS1 Location: 80069-801 23 bp Feature: domain Description: HTH_Tnp_IS1 Location: 80144-80249 bp Feature: domain Description: HTH_Tnp_IS1 Location: 801 44-80249 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), RVT-UG5, Zn_Tnp_IS1 (pfam03811), HTH_Tnp_IS1 (pfam12759)

Seq: APXO01000061.1 Escherichia coli BCE032_MS-12 gecBCE032MS12.contig.60, whole genome shotgun sequence (22193 bp)
Overview 1 RT 1: 11208-19879 bp Neighborhood of RT #1 [11208, 20274] InsE PHA02517 RVT-GII GIIM PHA02517 DUF4011 DEXXQc_SF1 SF1_C_Upf1 MTES_1575 Feature: gene Location: 11208-11534 bp Ori: ENB35891.1 Feature: domain Description: InsE Location: 11220-11484 bp Feature: domain Description: InsE Location: 112 2 0-11484 bp Feature: gene Location: 11540-11959 bp Ori: ENB35894.1 Feature: domain Description: PHA02517 Location: 11555-11894 bp Feature: domain Description: PHA02 517 Location: 11555-11894 bp Feature: gene Location: 12565-14073 bp Ori: ENB35895.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12823-13555 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 82 3-13555 bp Feature: domain Description: GIIM Note: maturase Location: 13630-13828 bp Feature: domain Description: GIIM Note: maturase Location: 13630-1382 8 bp Feature: gene Location: 14196-14612 bp Ori: ENB35885.1 Feature: domain Description: PHA02517 Location: 14199-14604 bp Feature: domain Description: PHA02 517 Location: 14199-14604 bp Feature: gene Location: 14833-20274 bp Ori: ENB35888.1 Feature: domain Description: DUF4011 Location: 15130-15463 bp Feature: domain Description: DUF4011 Location: 15130-15463 bp Feature: domain Description: DEXXQc_SF1 Location: 15820-18922 bp Feature: domain Description: DEXXQc_SF1 Location: 1582 0-1892 2 bp Feature: domain Description: SF1_C_Upf1 Location: 18931-19459 bp Feature: domain Description: SF1_C_Upf1 Location: 18931-19459 bp Feature: domain Description: MTES_1575 Location: 19588-19879 bp Feature: domain Description: MTES_1575 Location: 19588-19879 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), SF1_C_Upf1 (cd18808), MTES_1575 (pfam18741)

Seq: APXO01000088.1 Escherichia coli BCE032_MS-12 gecBCE032MS12.contig.88, whole genome shotgun sequence (3494 bp)
Overview 1 RT 1: 102-2246 bp Neighborhood of RT #1 [102, 2377] RVT-GII PRK09413 COG4584 Feature: gene Location: 102-383 bp Ori: ENB32622.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 108-249 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 108-249 bp Feature: gene Location: 1394-1567 bp Ori: ENB32621.1 Feature: domain Description: PRK09413 Location: 1397-1550 bp Feature: domain Description: PRK09413 Location: 13 97-1550 bp Feature: gene Location: 1634-2377 bp Ori: ENB32619.1 Feature: domain Description: COG4584 Location: 1637-2246 bp Feature: domain Description: COG4584 Location: 163 7-2246 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK09413 (IS2 repressor TnpA; Reviewed), COG4584 (Transposase )

Seq: APXO01000100.1 Escherichia coli BCE032_MS-12 gecBCE032MS12.contig.100, whole genome shotgun sequence (44839 bp)
Overview 1 RT 1: 718-3912 bp Neighborhood of RT #1 [718, 3914] RVT-GII GIIM HNHc gntK PRK14987 Feature: gene Location: 718-1992 bp Ori: ENB31050.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 721-1303 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 721-1303 bp Feature: domain Description: GIIM Note: maturase Location: 1354-1588 bp Feature: domain Description: GIIM Note: maturase Location: 1354 -1588 bp Feature: domain Description: HNHc Note: nucleases Location: 1798-1957 bp Feature: domain Description: HNHc Note: nucleases Location: 1798-1957 bp Feature: gene Location: 2253-2741 bp Ori: ENB31051.1 Gene: gntK Feature: domain Description: gntK Location: 2256-2736 bp Feature: domain Description: gntK Location: 2256-2736 bp Feature: gene Location: 2919-3914 bp Ori: ENB31077.1 Gene: gntR Feature: domain Description: PRK14987 Location: 2922-3912 bp Feature: domain Description: PRK14 987 Location: 2922-3912 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507), gntK (PRK11545), PRK14987 (HTH-type transcriptional regulator GntR)

Seq: APXO01000141.1 Escherichia coli BCE032_MS-12 gecBCE032MS12.contig.141, whole genome shotgun sequence (9932 bp)
Overview 1 RT 1: 1205-4680 bp Neighborhood of RT #1 [1205, 4685] DUF4094 Peptidase_S74 RVT-UG17 PRK10597 Feature: gene Location: 1205-1909 bp Ori: ENB28561.1 Feature: domain Description: DUF4094 Location: 1247-1337 bp Feature: domain Description: DUF4094 Location: 1247-1337 bp Feature: domain Description: Peptidase_S74 Location: 1553-1712 bp Feature: domain Description: Peptidase_S74 Location: 15 5 3-1712 bp Feature: gene Location: 1920-2207 bp Feature: gene Location: 2315-3685 bp Ori: ENB28556.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 2543-3149 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 25 43-3149 bp Feature: gene Location: 4173-4289 bp Feature: gene Location: 4437-4685 bp Ori: ENB28555.1 Feature: domain Description: PRK10597 Location: 4440-4680 bp Feature: domain Description: PRK105 97 Location: 4440-4680 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4094 (pfam13334), Peptidase_S74 (pfam13884), RVT-UG17, PRK10597 (DNA damage-inducible protein I; Provisional)