myRT

myRT report for GCA_000356425.2_ASM35642v2

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Seq: APXP01000047.1 Escherichia coli MP021561.3 gecMP0215613.contig.46, whole genome shotgun sequence (8358 bp)
Overview 1 RT 1: 775-2808 bp Neighborhood of RT #1 [775, 2918] RVT-GII GIIM D Ogr_Delta Feature: gene Location: 775-2106 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1060-1747 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 060-1 747 bp Feature: domain Description: GIIM Note: maturase Location: 1864-2032 bp Feature: domain Description: GIIM Note: maturase Location: 1 864-2032 bp Feature: gene Location: 2244-2615 bp Feature: domain Description: D Location: 2274-2589 bp Feature: domain Description: D Location: 2274-2589 bp Feature: gene Location: 2658-2918 bp Feature: domain Description: Ogr_Delta Location: 2667-2808 bp Feature: domain Description: Ogr_Delta Location: 2667-2808 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT D (PHA02561), Ogr_Delta (pfam04606), RVT-GII, GIIM (pfam08388)

Seq: APXP01000028.1 Escherichia coli MP021561.3 gecMP0215613.contig.27, whole genome shotgun sequence (3196 bp)
Overview 1 RT 1: 44-3197 bp Neighborhood of RT #1 [44, 3196] RVT_N RVT-GII GIIM HNHc PRK13699 Feature: gene Location: 44-169 bp Feature: gene Location: 430-2088 bp Feature: RT Description: RVT_N Location: 442-685 bp Feature: RT Description: RVT_N Location: 442 -685 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 730-1366 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 730-1366 bp Feature: domain Description: GIIM Note: maturase Location: 1417-1651 bp Feature: domain Description: GIIM Note: maturase Location: 1417-1651 bp Feature: domain Description: HNHc Note: nucleases Location: 1882-2032 bp Feature: domain Description: HNHc Note: nucleases Location: 1882 -2 032 bp Feature: gene Location: 2167-2295 bp Feature: gene Location: 2732-3196 bp Feature: domain Description: PRK13699 Location: 2756-3197 bp Feature: domain Description: PRK13699 Location: 2 756-3197 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13699 (putative methylase; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: APXP01000140.1 Escherichia coli MP021561.3 gecMP0215613.contig.140, whole genome shotgun sequence (2762 bp)
Overview 1 RT 1: 1-2741 bp Neighborhood of RT #1 [1, 2746] InsE RVT_N RVT-GII YkfC TnpB_IS66 Feature: gene Location: 1-315 bp Feature: domain Description: InsE Location: 4-313 bp Feature: domain Description: InsE Location: 4-3 13 bp Feature: gene Location: 341-1837 bp Feature: RT Description: RVT_N Location: 389-632 bp Feature: RT Description: RVT_N Location: 3 89-63 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 677-1319 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 677-13 19 bp Feature: domain Description: YkfC Location: 1451-1691 bp Feature: domain Description: YkfC Location: 1451-1691 bp Feature: gene Location: 2435-2746 bp Feature: domain Description: TnpB_IS66 Location: 2462-2741 bp Feature: domain Description: TnpB_IS66 Location: 2462-2741 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), RVT_N (pfam13655), RVT-GII, YkfC (COG3344)

Seq: APXP01000182.1 Escherichia coli MP021561.3 gecMP0215613.contig.182, whole genome shotgun sequence (6728 bp)
Overview 1 RT 1: 45-1421 bp Neighborhood of RT #1 [45, 1456] RVT-GII HNHc Feature: gene Location: 45-176 bp Feature: gene Location: 188-433 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 191-380 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 191-380 bp Feature: gene Location: 621-734 bp Feature: gene Location: 1025-1456 bp Feature: domain Description: HNHc Note: nucleases Location: 1262-1421 bp Feature: domain Description: HNHc Note: nucleases Location: 1262-14 21 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HNHc (smart00507), RVT-GII