myRT

myRT report for GCA_000356445.2_ASM35644v2

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Seq: APXG01000005.1 Escherichia coli 2860650 gec2860650.contig.4, whole genome shotgun sequence (11337 bp)
Overview 1 RT 1: 12-2045 bp Neighborhood of RT #1 [12, 2155] RVT-GII GIIM D Ogr_Delta Feature: gene Location: 12-1343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 297-984 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 297-984 bp Feature: domain Description: GIIM Note: maturase Location: 1101-1269 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 01 -1 269 bp Feature: gene Location: 1481-1852 bp Feature: domain Description: D Location: 1511-1826 bp Feature: domain Description: D Location: 1 51 1 -1 826 bp Feature: gene Location: 1895-2155 bp Feature: domain Description: Ogr_Delta Location: 1904-2045 bp Feature: domain Description: Ogr_Delta Location: 1 904-2045 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), D (PHA02561), Ogr_Delta (pfam04606)

Seq: APXG01000061.1 Escherichia coli 2860650 gec2860650.contig.60, whole genome shotgun sequence (3022 bp)
Overview 1 RT 1: 81-2549 bp Neighborhood of RT #1 [81, 2707] RVT-GII GIIM DDE_Tnp_Tn3 rve_3 Feature: gene Location: 81-1412 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1053 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1053 bp Feature: domain Description: GIIM Note: maturase Location: 1170-1338 bp Feature: domain Description: GIIM Note: maturase Location: 1170-1338 bp Feature: gene Location: 1915-2106 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 1918-2026 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 1918-2 02 6 bp Feature: gene Location: 2420-2707 bp Feature: domain Description: rve_3 Location: 2468-2549 bp Feature: domain Description: rve_3 Location: 2 468-2 549 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_Tn3 (pfam01526), rve_3 (pfam13683), RVT-GII, GIIM (pfam08388)

Seq: APXG01000126.1 Escherichia coli 2860650 gec2860650.contig.126, whole genome shotgun sequence (30310 bp)
Overview 1 RT 1: 9998-15262 bp Neighborhood of RT #1 [9998, 15273] LysM IAT_beta PRK15318 Invasin_D3 PHA02517 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 9998-11848 bp Feature: domain Description: LysM Location: 10211-10349 bp Feature: domain Description: LysM Location: 10211-103 49 bp Feature: domain Description: IAT_beta Location: 10430-11255 bp Feature: domain Description: IAT_beta Location: 1043 0-11255 bp Feature: domain Description: PRK15318 Location: 11456-11579 bp Feature: domain Description: PRK153 18 Location: 11456-11579 bp Feature: domain Description: Invasin_D3 Location: 11594-11831 bp Feature: domain Description: Invasin_D3 Location: 11594-1183 1 bp Feature: gene Location: 11850-12242 bp Feature: domain Description: PHA02517 Location: 11856-12234 bp Feature: domain Description: PHA02517 Location: 11856-1223 4 bp Feature: gene Location: 12407-13915 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12665-13397 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12665-13 3 97 bp Feature: domain Description: GIIM Note: maturase Location: 13472-13670 bp Feature: domain Description: GIIM Note: maturase Location: 13 472-13 670 bp Feature: gene Location: 14522-14941 bp Feature: domain Description: PHA02517 Location: 14537-14876 bp Feature: domain Description: PHA02517 Location: 1453 7-14876 bp Feature: gene Location: 14989-15273 bp Feature: domain Description: InsE Location: 15001-15262 bp Feature: domain Description: InsE Location: 15001-15262 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963), LysM (smart00257), IAT_beta (pfam11924), PRK15318 (intimin-like protein SinH; Provisional), Invasin_D3 (pfam09134)

Seq: APXG01000015.1 Escherichia coli 2860650 gec2860650.contig.14, whole genome shotgun sequence (7087 bp)
Overview 1 RT 1: 12-6522 bp Neighborhood of RT #1 [12, 6522] RVT-GII GIIM Peptidase_S6 autotrans_barl Feature: gene Location: 12-1343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 297-984 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 297-984 bp Feature: domain Description: GIIM Note: maturase Location: 1101-1269 bp Feature: domain Description: GIIM Note: maturase Location: 1101-1269 bp Feature: gene Location: 2142-6236 bp Feature: domain Description: Peptidase_S6 Location: 2295-4479 bp Feature: domain Description: Peptidase_S6 Location: 2295-4 4 79 bp Feature: domain Description: autotrans_barl Location: 5013-6234 bp Feature: domain Description: autotrans_barl Location: 5013-6234 bp Feature: gene Location: 6406-6522 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)

Seq: APXG01000041.1 Escherichia coli 2860650 gec2860650.contig.40, whole genome shotgun sequence (6940 bp)
Overview 1 RT 1: 1170-3341 bp Neighborhood of RT #1 [1170, 3341] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 1170-2837 bp Feature: RT Description: RVT_N Location: 1218-1455 bp Feature: RT Description: RVT_N Location: 1218-145 5 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1506-2148 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15 06-2148 bp Feature: domain Description: GIIM Note: maturase Location: 2199-2433 bp Feature: domain Description: GIIM Note: maturase Location: 2199-2433 bp Feature: domain Description: HNHc Note: nucleases Location: 2643-2802 bp Feature: domain Description: HNHc Note: nucleases Location: 2643-2802 bp Feature: gene Location: 2981-3136 bp Feature: gene Location: 3150-3341 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)