myRT

myRT report for GCA_000356505.2_ASM35650v2

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Seq: APXJ01000095.1 Escherichia coli 2866350 gec2866350.contig.99, whole genome shotgun sequence (31927 bp)
Overview 1 RT 1: 11658-16802 bp Neighborhood of RT #1 [11658, 16813] LysM IAT_beta PRK15318 Invasin_D3 PHA02517 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 11658-13388 bp Feature: domain Description: LysM Location: 11751-11889 bp Feature: domain Description: LysM Location: 1 1 751 -1 1 889 bp Feature: domain Description: IAT_beta Location: 11970-12795 bp Feature: domain Description: IAT_beta Location: 1 1 970-1 2795 bp Feature: domain Description: PRK15318 Location: 12996-13119 bp Feature: domain Description: PRK1 531 8 Location: 1 2996-1 31 1 9 bp Feature: domain Description: Invasin_D3 Location: 13134-13371 bp Feature: domain Description: Invasin_D3 Location: 1 31 34-1 3371 bp Feature: gene Location: 13390-13782 bp Feature: domain Description: PHA02517 Location: 13396-13774 bp Feature: domain Description: PHA0251 7 Location: 1 3396-1 3774 bp Feature: gene Location: 13947-15455 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14205-14937 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 4205-1 4937 bp Feature: domain Description: GIIM Note: maturase Location: 15012-15210 bp Feature: domain Description: GIIM Note: maturase Location: 1 501 2-1 521 0 bp Feature: gene Location: 16062-16487 bp Feature: domain Description: PHA02517 Location: 16083-16422 bp Feature: domain Description: PHA0251 7 Location: 1 6083-1 6422 bp Feature: gene Location: 16529-16813 bp Feature: domain Description: InsE Location: 16541-16802 bp Feature: domain Description: InsE Location: 1 6541 -1 6802 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LysM (smart00257), IAT_beta (pfam11924), PRK15318 (intimin-like protein SinH; Provisional), Invasin_D3 (pfam09134), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963)

Seq: APXJ01000010.1 Escherichia coli 2866350 gec2866350.contig.11, whole genome shotgun sequence (6957 bp)
Overview 1 RT 1: 3233-6784 bp Neighborhood of RT #1 [3233, 6858] Phage_integrase RVT-GII GIIM Feature: gene Location: 3233-4030 bp Feature: domain Description: Phage_integrase Location: 3365-3944 bp Feature: domain Description: Phage_integrase Location: 3365-3944 bp Feature: gene Location: 4027-4716 bp Feature: gene Location: 5527-6858 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5812-6499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5812 -6499 bp Feature: domain Description: GIIM Note: maturase Location: 6616-6784 bp Feature: domain Description: GIIM Note: maturase Location: 6616-6784 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_integrase (pfam00589), RVT-GII, GIIM (pfam08388)

Seq: APXJ01000023.1 Escherichia coli 2866350 gec2866350.contig.24, whole genome shotgun sequence (8606 bp)
Overview 1 RT 1: 3123-6597 bp Neighborhood of RT #1 [3123, 6597] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 3123-3260 bp Feature: gene Location: 3543-3791 bp Feature: gene Location: 4426-6093 bp Feature: RT Description: RVT_N Location: 4474-4711 bp Feature: RT Description: RVT_N Location: 4474-4711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4762-5404 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4762-5404 bp Feature: domain Description: GIIM Note: maturase Location: 5455-5689 bp Feature: domain Description: GIIM Note: maturase Location: 5455-5689 bp Feature: domain Description: HNHc Note: nucleases Location: 5899-6058 bp Feature: domain Description: HNHc Note: nucleases Location: 5899-6058 bp Feature: gene Location: 6237-6392 bp Feature: gene Location: 6406-6597 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: APXJ01000106.1 Escherichia coli 2866350 gec2866350.contig.110, whole genome shotgun sequence (7610 bp)
Overview 1 RT 1: 492-7507 bp Neighborhood of RT #1 [492, 7610] RVT-GII GIIM Peptidase_S6 autotrans_barl HTH_23 InsE Feature: gene Location: 492-1823 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 777-1464 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 777-14 64 bp Feature: domain Description: GIIM Note: maturase Location: 1581-1749 bp Feature: domain Description: GIIM Note: maturase Location: 1581-174 9 bp Feature: gene Location: 2622-6716 bp Feature: domain Description: Peptidase_S6 Location: 2775-4959 bp Feature: domain Description: Peptidase_S6 Location: 2775-4 959 bp Feature: domain Description: autotrans_barl Location: 5493-6714 bp Feature: domain Description: autotrans_barl Location: 54 93-6714 bp Feature: gene Location: 6964-7610 bp Feature: domain Description: HTH_23 Location: 7024-7135 bp Feature: domain Description: HTH_23 Location: 7024 -7135 bp Feature: domain Description: InsE Location: 7267-7507 bp Feature: domain Description: InsE Location: 7267-7507 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), RVT-GII, GIIM (pfam08388)

Seq: APXJ01000025.1 Escherichia coli 2866350 gec2866350.contig.26, whole genome shotgun sequence (6103 bp)
Overview 1 RT 1: 492-2525 bp Neighborhood of RT #1 [492, 2635] RVT-GII GIIM D Ogr_Delta Feature: gene Location: 492-1823 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 777-1464 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 777-1464 bp Feature: domain Description: GIIM Note: maturase Location: 1581-1749 bp Feature: domain Description: GIIM Note: maturase Location: 15 81-1749 bp Feature: gene Location: 1961-2332 bp Feature: domain Description: D Location: 1991-2306 bp Feature: domain Description: D Location: 1991-2306 bp Feature: gene Location: 2375-2635 bp Feature: domain Description: Ogr_Delta Location: 2384-2525 bp Feature: domain Description: Ogr_Delta Location: 2384-25 25 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT D (PHA02561), Ogr_Delta (pfam04606), RVT-GII, GIIM (pfam08388)